Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0624
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    30   1.3  
AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine re...    29   3.9  
AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical ...    28   6.9  

>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +1

Query: 544 TVRV*NITAIIRLYRRNVEENXRQFNDIMILFAXKKNHL 660
           TV+V N+T I++   R+ E++  +F+D+++    +K H+
Sbjct: 125 TVKVTNMTGILKKKLRSFEKSEEEFSDVVLAVEDEKFHV 163


>AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein15 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
 Frame = -3

Query: 533 CLTYLLYEFMSISNECSLYSFN*FGNYSKVTMVIKLQINSTYSGPFCDVPKINIALIFLF 354
           C + L+   + +S+  S  +F    +  K+  V+ +     + G F   P I       +
Sbjct: 138 CASSLVLAVIRVSDLNSTNTFKKSFDGGKINYVLLVCFAYVFYGTFFTKPVIYNTGYMTW 197

Query: 353 IFGKYFSKLNL*FSYYCY*-----LLELSVSFTLKVRFLILT*NTTANLSKYLSNKSIR 192
           +F     K +  +  Y +      +  LS+SF   +  + L  N+TAN SK LSN  I+
Sbjct: 198 VFDPNIGKSSSNYVNYIHISNNSMVAILSISFYGYLASIYLRGNSTANASKKLSNMQIK 256


>AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical
           protein F52C6.8 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 544 TVRV*NITAIIRLYRRNVEENXRQFNDIMILFAXKKNHL 660
           TV+V N+T I++   ++ E++  QF+D+++    +  H+
Sbjct: 125 TVKVTNMTGILKKKLKSFEKSEEQFSDVILAVEDETFHV 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,037
Number of Sequences: 27780
Number of extensions: 255992
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)