Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0624
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40540.1 68415.m05002 potassium transporter, putative (KT2) i...    28   4.9  
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p...    27   8.5  

>At2g40540.1 68415.m05002 potassium transporter, putative (KT2)
           identical to putative potassium transporter AtKT2p
           [Arabidopsis thaliana] gi|2384671|gb|AAC49845, strong
           similarity to potassium transporter HAK2p
           [Mesembryanthemum crystallinum] GI:14091471; KUP/HAK/KT
           Transporter family member, PMID:11500563
          Length = 794

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 75  NLLKHVWHKRRQKESITKKSLETNE 149
           + +++ WHKR Q+E    +S+++NE
Sbjct: 620 DFIRYDWHKRTQQEDDNARSVQSNE 644


>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to 26S proteasome regulatory
           subunit S3 SP:P93768 [Nicotiana tabacum (Common
           tobacco)]
          Length = 487

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 469 LKE*REHSLLIDINSYNKYVRQLIRTVRV 555
           L+  +E + LID  SY K VR++ R VR+
Sbjct: 25  LQNLKEIAALIDTGSYTKEVRRIARAVRL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,896,532
Number of Sequences: 28952
Number of extensions: 215378
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)