Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0623
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    72   1e-13
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.3  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   3.1  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   9.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.4  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   9.4  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = +1

Query: 256 EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 402
           +D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 82  KDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 32/46 (69%), Positives = 36/46 (78%)
 Frame = +2

Query: 122 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDRK 259
           +R +G+ V DVS IT APE+LGGRVKTLHPAVH GILAR   SD K
Sbjct: 37  IRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEK 82



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/56 (42%), Positives = 29/56 (51%)
 Frame = +2

Query: 509 RQRLALKAFTHTSDYDLAISDYFRKQYSXGASPTDLKIRYEPTSEAGPXFHDQRQL 676
           R   ALKAF  T+ YD AI+DYFRKQY+ G     L+    P       F +Q  L
Sbjct: 164 RNTYALKAFASTASYDAAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPL 219



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 34/95 (35%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +3

Query: 408 KNHDRVTVVCXPADYDAVVKEIKENKHHQTSLGTGRD*P*RRSLILRTMTSPYRTTSASN 587
           KNH RVT++  PADY     +   +K  Q    T        +L     T+ Y       
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQDDRNT-------YALKAFASTASYDAAITDY 185

Query: 588 TRX----GQAQLTLRYGMNPHQKPAXVFTTRDSLP 680
            R     G  QLTLRYG NPHQ PA  F  +  LP
Sbjct: 186 FRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLP 220



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3

Query: 18  ALLSVSDKTGLLSLAKSLSECGLQLIASGG 107
           ALLSV DKTGLL LAK+L+  G++L+ SGG
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGG 32


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 389 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 294
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 224 QRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAAVAVAATGD---QLQATFRQTLC 60
           +R P+D+ ++P P A+ + +   T L++   +    + V  TG    +L +   Q LC
Sbjct: 594 RRYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELC 651


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 482 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 366
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 270  TFHVFRSESDNRAKIPACTAGCKVFTRPPSIS 175
            T  V+R   +   K+P+ TA  KV T  P+++
Sbjct: 1012 THDVYRQTDNPEIKLPSDTASSKVDTHNPTVT 1043


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 446 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 303
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,003
Number of Sequences: 5004
Number of extensions: 54625
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)