Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0623
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    55   7e-08
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529...    30   2.4  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    29   3.2  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    29   5.6  
03_02_0814 + 11467775-11468308                                         28   7.4  
08_01_0621 - 5426210-5427787                                           28   9.8  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 26/39 (66%), Positives = 28/39 (71%)
 Frame = +2

Query: 122 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILAR 238
           L  AG+ V  V  IT  PEML GRVKTLHP+VH GILAR
Sbjct: 82  LEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGILAR 120



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 292 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 402
           VVV NLYPF   V+   ++  D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 12  KLALLSVSDKTGLLSLAKSLSECGLQLIASGG 107
           K AL+S+SDKT L  L   L   G  +I++GG
Sbjct: 46  KQALISLSDKTDLAYLGNGLQALGFSIISTGG 77



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 482 QTSSDVFRHRQRLALKAFTHTSDYDLAISDYFRKQ 586
           Q   D  + R+ LA KAF H + YD A+S++  KQ
Sbjct: 201 QGKQDDQQFRKMLAWKAFQHVASYDSAVSEWLWKQ 235



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 612 TLRYGMNPHQKPA 650
           TLRYG NPHQK A
Sbjct: 265 TLRYGENPHQKAA 277


>03_06_0758 -
           36052261-36052301,36052463-36052697,36052895-36052966,
           36056477-36056567,36056650-36056872,36056964-36057300,
           36057406-36057588
          Length = 393

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 145 NCQAGVPKR-PWR*PPLAINCRPHSDRLFANESRPVLSETLRRASFP 8
           +  A  P+R PWR P    N  P+ D +    S P LSE  R    P
Sbjct: 6   SASADPPRRSPWRHPSNGGNPNPNGDAVIDTTSWPALSEAARNPPKP 52


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 372 DVLDRVRHGHVRLRYRLDE-RVQVTDHHAYHLV 277
           DVL  +R GHV L Y L E      DHH   LV
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHHMDDLV 719


>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
            13676868-13677330,13677855-13678036,13678093-13678235,
            13678315-13678423,13679000-13679456,13680490-13682473,
            13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 393  EGHAADVDVLDRVRHGHVRLRYRLDERVQVTDHHAYH 283
            +GH  D    DR  HGH R R+  D+R    D   YH
Sbjct: 1296 DGHDRDHHRHDRRHHGHDR-RHHFDDRGYHYDDRGYH 1331


>03_02_0814 + 11467775-11468308
          Length = 177

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 300 DHHAYHLVLLTFHVFRSESDNRAK--IPACTAGCKV--FTRPPSISGA 169
           DHH +H     +H F S S  RA   +PA  AG  V   + PP+++ A
Sbjct: 82  DHHHHHHQQQRYHSFSSSSFGRASMMMPAAAAGGVVPRSSMPPTMATA 129


>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 461 YSIVVGRVTDDGDPVVVLGXARRRVTPP 378
           YS+  GR+ DDGD  + +   RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,048,329
Number of Sequences: 37544
Number of extensions: 406041
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)