Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0623
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      72   6e-13
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)                    31   1.4  
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)                   29   4.3  
SB_26612| Best HMM Match : NC (HMM E-Value=6.7)                        29   4.3  
SB_33555| Best HMM Match : LIM (HMM E-Value=1.3)                       29   5.7  
SB_40444| Best HMM Match : LIM (HMM E-Value=3.4)                       29   5.7  
SB_30692| Best HMM Match : REV (HMM E-Value=3.8)                       28   7.5  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   28   10.0 
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = +2

Query: 122 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDR 256
           +RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GILAR+S+ D+
Sbjct: 70  IRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDK 114



 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 34/48 (70%), Positives = 39/48 (81%)
 Frame = +1

Query: 259 DMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 402
           DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 116 DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
 Frame = +3

Query: 408 KNHDRVTVVCXPADYDAVVKEIKENKHHQTSLGTGRD*P*RRSLILRTM--TSPYRTTSA 581
           KNH+RVTVVC P DY+ V+ E+ EN+   T   T      R++L L+    T+ Y    +
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDT------RKTLALKAFSHTASYDMAIS 219

Query: 582 SNTRXGQAQ----LTLRYGMNPHQKPAXVFTTRDSLPI 683
              R   ++    + LRYGMNPHQKPA + T    LP+
Sbjct: 220 DYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPV 257



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +2

Query: 509 RQRLALKAFTHTSDYDLAISDYFRKQYSXGASPTDLKIRYEP 634
           R+ LALKAF+HT+ YD+AISDYFRK+YS   S   L+    P
Sbjct: 200 RKTLALKAFSHTASYDMAISDYFRKEYSENVSHIPLRYGMNP 241



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +3

Query: 9   GKLALLSVSDKTGLLSLAKSLSECGLQLIASGG 107
           G LALLSVS+K GL+  AK L + G +L+ASGG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGG 65



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 691 LKRAPGFINLCEALKAWQL 747
           L  APGFINLC+A  +WQL
Sbjct: 260 LNGAPGFINLCDAFNSWQL 278


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 34/48 (70%), Positives = 39/48 (81%)
 Frame = +1

Query: 259 DMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 402
           DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 13  DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 408 KNHDRVTVVCXPADYD 455
           KNH+RVTVVC P DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
          Length = 918

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 227 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAAVAVAAT 99
           Y R+P  ++F PDPR+  V++     + + G+R E   A   T
Sbjct: 839 YPRLPATIRFDPDPRSRIVIAKQGRPVPVPGKRGEKVDAYKGT 881


>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 227  YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAAVAVAATGDQLQATFRQTLC*RE* 48
            Y R+P  ++F PDP  +         + + G+R E   A   TG  +Q   R  +  R  
Sbjct: 938  YPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGEKVDAYKGTGKTIQTPRRLFIIDRSL 997

Query: 47   TRFVRNA 27
              ++ NA
Sbjct: 998  EGWITNA 1004


>SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)
          Length = 605

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 190 SGENFTSSGTRWYLSSIIRL*PEDMKRQKYEMISVVVCNLYPFVQTV 330
           S EN+     R+Y  S+  L P  ++R K   +++ +C  Y +V  V
Sbjct: 225 SRENWLEISARFYACSVRSLVPIPLRRAKAGWVNLFLCFAYAYVDPV 271


>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
          Length = 451

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -1

Query: 491 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 321
           +  V+   +  S+   R+T   D V        R+TP M    TAS T   +T  +DTV+
Sbjct: 133 LTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVY 192

Query: 320 TNGYRLQTTTLII 282
           T        TL++
Sbjct: 193 TASVTFYRLTLVM 205



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 482 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 312
           V+   +  S+   RVT   D V        R+TP M    TAS T   +T  +DTV+T  
Sbjct: 68  VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127

Query: 311 YRLQTTTLII 282
                 TL++
Sbjct: 128 VTFYRLTLVM 137



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -1

Query: 491 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 321
           +  V+   +  S+   R+T   D V        R+TP M    TAS T   VT  +DTV+
Sbjct: 269 LTLVMDTVYTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVY 328

Query: 320 TNGYRLQTTTLIIS 279
           T        TL+++
Sbjct: 329 TASVTFFRVTLVMN 342


>SB_33555| Best HMM Match : LIM (HMM E-Value=1.3)
          Length = 215

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 227 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAAVAVAATGDQLQ 84
           Y R+P  ++F PDP  +         + + G+R E   A   TG  +Q
Sbjct: 17  YPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGEKVDAYKGTGKTIQ 64


>SB_40444| Best HMM Match : LIM (HMM E-Value=3.4)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 227 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAAVAVAATGDQLQ 84
           Y R+P  ++F PDP  +         + + G+R E   A   TG  +Q
Sbjct: 106 YPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGEKVDAYKGTGKTIQ 153


>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
          Length = 485

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 107 LPPRPLRNAGLTVQDVSDITRAPEMLGGRVKT----LHPAVHAGILARLSDSDR 256
           LPPR    A  TV D S     P+  GG+V +    L P V  G++   S S +
Sbjct: 166 LPPRSSNEANETVIDTSLTDSPPDAEGGKVTSNEDELVPTVSQGVVEATSPSQQ 219


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 367 NIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 501
           N D+      +  P      PSS TR T    +KK  R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 476 FDFFDYSIVVGRVTDDGDPVVVL 408
           FDF D+SI+V ++T    PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 227 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAAVAVAAT 99
           Y R+P  ++F PDP  +         + + G+R E  VA   T
Sbjct: 604 YPRLPATIRFDPDPSVAHCYRKQGRPVPVPGKRGEKVVAYKGT 646


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 322  QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 453
            +T   P+ T        +I GV+   A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,636,318
Number of Sequences: 59808
Number of extensions: 459988
Number of successful extensions: 1318
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)