Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0623
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 74 1e-13
U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical pr... 34 0.13
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 29 2.9
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z99771-1|CAB16919.2| 910|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z66511-8|CAA91319.2| 910|Caenorhabditis elegans Hypothetical pr... 29 5.0
U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/48 (66%), Positives = 41/48 (85%)
Frame = +2
Query: 116 RPLRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDRK 259
+ +R+ G+ V DV+D+T+ PEMLGGRVKTLHPAVH GILAR ++SDRK
Sbjct: 40 KAIRDQGIDVHDVADVTKFPEMLGGRVKTLHPAVHGGILARDTESDRK 87
Score = 67.7 bits (158), Expect = 9e-12
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +1
Query: 256 EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 402
+D+++ +SVVVCNLYPF +TV D +V +AVENIDIGGVTLLRA
Sbjct: 87 KDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135
Score = 57.2 bits (132), Expect = 1e-08
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Frame = +3
Query: 408 KNHDRVTVVCXPADYDAVVKEIKENKHHQTSLGTGRD*P*RRSLILRTM--TSPYRTTSA 581
KNH+RV+V+C PADYD ++ E+K S GT R+ R+ L L+ T+ Y + +
Sbjct: 138 KNHERVSVICDPADYDHIISELK-------SGGTTRE--RRQLLALKAFEHTTSYDESIS 188
Query: 582 SNTR-----XGQAQLTLRYGMNPHQK-PAXVFTTRDSLPI 683
R G+ L LRYG NPHQK A ++ D +PI
Sbjct: 189 GFMRRRFAGNGERALPLRYGTNPHQKDDAELYIVEDEMPI 228
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/36 (63%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +3
Query: 3 SNGK-LALLSVSDKTGLLSLAKSLSECGLQLIASGG 107
++GK LA++SVSDKTGL+ LA L GL LIASGG
Sbjct: 2 TDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGG 37
>U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical
protein C55F2.1c protein.
Length = 393
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 597 GQAQLTLRYGMNPHQK-PAXVFTTRDSLPI 683
G+ L LRYG NPHQK A ++ D +PI
Sbjct: 69 GERALPLRYGTNPHQKDDAELYIVEDEMPI 98
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 527 KAFTHTSDYDLAISDYFRKQYSXGASPTDLKIRY 628
KAF HT+ YD +IS + R++++ G L +RY
Sbjct: 45 KAFEHTTSYDESISGFMRRRFA-GNGERALPLRY 77
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 197 SPDPRASPVLS*CPTH-LELSGRRSEAAVAVAATGDQLQATFRQT 66
SP A PV + T + SG S AVA AA G T RQT
Sbjct: 244 SPTTVAGPVFTTSSTSSISTSGEASSTAVAAAAAGSVAATTSRQT 288
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 197 SPDPRASPVLS*CPTH-LELSGRRSEAAVAVAATGDQLQATFRQT 66
SP A PV + T + SG S AVA AA G T RQT
Sbjct: 122 SPTTVAGPVFTTSSTSSISTSGEASSTAVAAAAAGSVAATTSRQT 166
>Z99771-1|CAB16919.2| 910|Caenorhabditis elegans Hypothetical
protein D1043.1 protein.
Length = 910
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 368 FSTASATVTSGLDTVWTNGYRLQTTTLIISYF*RFMSSGQSLIIELRY 225
FST SAT ++ V++ + T+ YF F+ S SL IE+RY
Sbjct: 181 FSTMSATAQV-VEQVFSVADTILHRTITDDYFHAFLKSTTSLCIEIRY 227
>Z66511-8|CAA91319.2| 910|Caenorhabditis elegans Hypothetical
protein D1043.1 protein.
Length = 910
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 368 FSTASATVTSGLDTVWTNGYRLQTTTLIISYF*RFMSSGQSLIIELRY 225
FST SAT ++ V++ + T+ YF F+ S SL IE+RY
Sbjct: 181 FSTMSATAQV-VEQVFSVADTILHRTITDDYFHAFLKSTTSLCIEIRY 227
>U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical
protein F45E4.6 protein.
Length = 322
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 280 EMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTR 444
+ I + +LYPFV + T ADAV++ + + + RTTT + + T+
Sbjct: 244 DRIDFTLYDLYPFVGKLGGCIYTEADAVDDKNSIHTLFIYSTTRTTTTTAKTTTK 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,551
Number of Sequences: 27780
Number of extensions: 319033
Number of successful extensions: 849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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