Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0623
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 47  STLVSKESVGMWPAVDRQWRLPPR 118
           +++V+    G +P +  QW LPPR
Sbjct: 469 ASVVAAALTGTYPTLLPQWCLPPR 492


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +2

Query: 110 PPRPLRNAGLTVQDVSDIT---RAPEMLGGRVKTLHPAV 217
           PP   +N  +   D S +     AP MLGGR  T +  V
Sbjct: 317 PPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYRVV 355


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 561 PYRTTSASNTRXGQAQLTLRYGMNPHQKP------AXVFTTRDSLPIH 686
           PYR      T    A+LT  Y  +  +KP      +  F+ +++L +H
Sbjct: 91  PYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,116
Number of Sequences: 438
Number of extensions: 3854
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)