Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0623
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    56   4e-08
At1g64410.1 68414.m07301 hypothetical protein                          29   2.7  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    29   2.7  
At4g36220.1 68417.m05153 cytochrome P450 84A1 (CYP84A1) / ferula...    29   4.7  
At5g17340.1 68418.m02031 expressed protein weak similarity to M3...    28   8.2  
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    28   8.2  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = +2

Query: 122 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILAR 238
           L NAG++V  V  +T  PEML GRVKTLHP +H GILAR
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILAR 146



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 292 VVVCNLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRA 402
           VVV NLYPF + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203



 Score = 34.3 bits (75), Expect = 0.094
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 3   SNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGG 107
           S  K AL+S+SDK  L SL   L E G  ++++GG
Sbjct: 69  SGEKQALISLSDKRDLASLGNGLQELGYTIVSTGG 103


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 408 KNHDRVTVVCXPADYDAVVKEIKENKHH 491
           K HDRVTV   P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 408 KNHDRVTVVCXPADYDAVVKEIKENKHH 491
           K HDRVTV   P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At4g36220.1 68417.m05153 cytochrome P450 84A1 (CYP84A1) /
           ferulate-5-hydroxylase (FAH1) identical to Cytochrome
           P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600)
           [Arabidopsis thaliana]
          Length = 520

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 178 DARGSGENFTSSGTRWYLSSIIRL*PEDMKRQKYEMISVV 297
           D    G    +S   W L+ ++R  PED+KR + E+  VV
Sbjct: 315 DVMFGGTETVASAIEWALTELLRS-PEDLKRVQQELAEVV 353


>At5g17340.1 68418.m02031 expressed protein weak similarity to M3.4
           protein [Brassica napus] GI:4574746
          Length = 160

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 199 FHPTPEHLRCSRDVRHILNCQAGVPKRPW-R*PPLAINC 86
           FHP P   +C  D + +  C A + K  + R P + ++C
Sbjct: 76  FHPPPVVTKCLADCKDVKTCLADIAKAFFTRKPAIGLDC 114


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 393 EGHAADVDVLDRVRHGHVRLRYRLDERVQVTDHHAYHLVLLTFHV 259
           +G+A     +  +R G     +RL E +  TDHHA  L +    +
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRI 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,122
Number of Sequences: 28952
Number of extensions: 300185
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)