Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0622
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 57 3e-09
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 41 2e-04
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 33 0.068
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 32 0.12
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 31 0.21
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.63
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 29 0.63
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 29 0.84
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 28 1.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.9
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.9
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 4.5
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 4.5
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 4.5
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 4.5
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 4.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 7.8
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 7.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 7.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 7.8
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +1
Query: 511 DSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGH 690
D HT+NKV S W+MTCA++PS +A GGL+N C +Y + EL GH
Sbjct: 49 DLHTSNKVAFFEAPSVWIMTCAFSPSTKSIAAGGLNNFCVVYDTSVPDAD---PVELVGH 105
Query: 691 SGYL 702
+G++
Sbjct: 106 AGFV 109
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
TLRGH+A +Y W +DSR LVS+SQD L V
Sbjct: 426 TLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKV 457
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 472 LGVGQSGW*ADRGDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLK 645
L G + A D T + + ++WV A+AP S +A G +DN + K
Sbjct: 150 LVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPK 207
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 32.7 bits (71), Expect = 0.068
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 529 KVHAIPLRSSWV--MTCA-YAPSGSYVACGGLDNICSIYSLKTR 651
K H + + S+ +TC ++P G ++A GG D++ SIYS R
Sbjct: 353 KEHVLDVFHSYFAGLTCVTWSPDGKFIAIGGKDDLVSIYSFPLR 396
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +1
Query: 559 WVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSGYLFLLPLSSTTTRF 738
+V + A++P G Y+A G D I+ + + RV R L GH ++ L S
Sbjct: 336 YVRSVAFSPDGKYLATGVEDQQIRIWDIAQK----RVYRLLTGHEQEIYSLDFSKDGKTL 391
Query: 739 *PASGDMXCAL 771
SGD L
Sbjct: 392 VSGSGDRTVCL 402
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 395 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQD 493
Q R R L GH +IY++ + D + LVS S D
Sbjct: 365 QKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGD 397
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLK 645
V + A++P G Y+ G LDN ++ L+
Sbjct: 461 VYSVAFSPDGKYLVSGSLDNTIKLWELQ 488
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 290 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 469
Q + + +AI D T + T + I Q TLRGH ++ + W
Sbjct: 7 QHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKF 66
Query: 470 N--LVSASQDGKLIVGTAT 520
L SAS DG +IV T
Sbjct: 67 GTILASASYDGHVIVWRET 85
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.63
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 407 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
++ L GH + + W +D L+S S D +LIV
Sbjct: 38 QKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIV 71
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.63
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 410 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
R L GH I ++ W S R L++AS+D K I+
Sbjct: 60 RVLTGHTRAIQSVCWSSCDRFLLTASRDWKCIL 92
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 565 MTC-AYAPSGSYVACGGLDNICSIYSLKTR 651
+TC AY+P G Y+ACG +Y +R
Sbjct: 482 ITCLAYSPDGKYLACGDASGKVVLYDANSR 511
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 401 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQD 493
R +T+RGH IY++ + +S LVS D
Sbjct: 538 RRIKTMRGHRGNIYSLSFSRESTVLVSGGSD 568
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 410 RTLRGHLAKIYAMHWGSDSRNLVSASQD 493
R GH I ++ W +DSR +S S+D
Sbjct: 140 REYTGHFDDIVSISWSADSRFFISTSKD 167
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 73 NITTLKQGYFTSFYHGTIHH*LF 5
N TT+ + YF++F+ G IH LF
Sbjct: 31 NNTTISKPYFSTFFEGGIHSLLF 53
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKL 502
LRGHLA + ++ + S + +V+AS D L
Sbjct: 343 LRGHLASVNSVQYSSKTGLIVTASSDRTL 371
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 214 APRTYNTQRTDPSVSNVPS 158
+P Y+ RT+P+V+N+PS
Sbjct: 393 SPEGYDNNRTNPTVNNLPS 411
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLD 618
V+ + PSGSY A GG+D
Sbjct: 53 VLVARFDPSGSYFASGGMD 71
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 392 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQD 493
+ R TL GH I + W + S+ L SAS D
Sbjct: 84 LTFRLECTLFGHYRGISQVKWATGSKYLASASDD 117
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 335 AACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV 478
AACDT + A +E +G + ++ ++L+G +++A +G DS +V
Sbjct: 376 AACDTFRSGA---IEQLG-VHVKNLQSLKGSSIELFAQGYGKDSSFVV 419
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQD 493
TL+GH +++ + W SD L S D
Sbjct: 299 TLQGHSSEVCGLAWRSDGLQLASGGND 325
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKL 502
LRGH+ ++Y++ + +SA D K+
Sbjct: 613 LRGHVGRVYSVTINPSRQQCISAGTDAKI 641
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 574 AYAPSGSYVACGGLDNICSIYS 639
A P+G +AC LDN +YS
Sbjct: 446 ALRPNGKSIACQSLDNCIYVYS 467
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 511 DSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT 648
D HT ++ S + + A P GS V+ GG D I I+ L++
Sbjct: 293 DVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRS 338
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVGTA 517
L GH+ + + W D R L+S S D +I+ A
Sbjct: 251 LIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDA 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,339
Number of Sequences: 5004
Number of extensions: 61487
Number of successful extensions: 223
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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