Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0622
(853 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 80 2e-15
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10) 43 4e-04
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 35 0.096
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17) 33 0.22
SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19) 33 0.29
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 31 0.90
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 31 1.6
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 30 2.1
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 30 2.1
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 30 2.7
SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05) 30 2.7
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 29 4.8
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12) 29 6.3
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30) 28 8.4
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 28 8.4
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 28 8.4
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 28 8.4
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 266 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 445
M+EL+ LRQE+E LK IRDARK A DT+LAQ ++N++ +GRIQMRTRRTLRG L I +
Sbjct: 1 MSELEQLRQESEALKCQIRDARKIAADTTLAQVSANIDQVGRIQMRTRRTLRGGLDNICS 60
Query: 446 MH 451
++
Sbjct: 61 IY 62
Score = 61.3 bits (142), Expect = 1e-09
Identities = 33/55 (60%), Positives = 37/55 (67%)
Frame = +1
Query: 607 GGLDNICSIYSLKTRXGNVRVXRELPGHSGYLFLLPLSSTTTRF*PASGDMXCAL 771
GGLDNICSIYSLKTR GNVRV RELPGH+ ++ +SGDM CAL
Sbjct: 53 GGLDNICSIYSLKTREGNVRVSRELPGHTDDCQII----------TSSGDMTCAL 97
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +1
Query: 529 KVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSGYLFL 708
K ++ R + M+ AY+P G Y+ACG +D I +I+ L T ++ L GH+ +
Sbjct: 98 KESSLDTRGKFTMSLAYSPDGHYIACGAIDGIINIFDLTTN----KLLHTLEGHAMPIRS 153
Query: 709 LPLSSTTTRF*PASGD 756
L S + AS D
Sbjct: 154 LTFSPDSQLLITASDD 169
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQDGKL 502
TL GH I ++ + DS+ L++AS DG +
Sbjct: 143 TLEGHAMPIRSLTFSPDSQLLITASDDGHI 172
>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
Length = 345
Score = 42.7 bits (96), Expect = 4e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 350 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQ 490
++ + LE + M+ RR L+GH K+ +M W D R+LVS+SQ
Sbjct: 199 TVKDVSRKLESLQGCHMKVRRILKGHQGKVLSMDWSGDCRHLVSSSQ 245
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 34.7 bits (76), Expect = 0.096
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +2
Query: 290 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 469
Q +E+L +RDA + C SL + + L P G + +TL GH +Y + +D
Sbjct: 1017 QLSESLAGLLRDALQP-CVPSLVPSRAFLTPPGG---QLTQTLVGHSKGVYGLAVTADGS 1072
Query: 470 NLVSASQDGKLIVGTA 517
+VS S+DG + V +A
Sbjct: 1073 CVVSGSEDGSVKVWSA 1088
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 289 PGGGNP*KRY*RCEKSGMRHVAGPGHLEPGADRSHTDAHPTNLARSS 429
PGGG P R +RHV P HL G +S+TD + NL+ S
Sbjct: 1289 PGGGRPSPRPSSPRTGHVRHVTSPRHLS-GVSKSNTDYNLHNLSTGS 1334
>SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)
Length = 289
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 395 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
Q T L+GH++K+ A+ + + S+ L+S +DG ++V
Sbjct: 119 QQGTAFELQGHISKVQALCFAAHSKKLISCGEDGAIMV 156
>SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)
Length = 426
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQD 493
TLRGH +YA +GS+ + L+SAS+D
Sbjct: 345 TLRGHSGPVYATCFGSEGKILLSASED 371
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSG 696
++ C+++P G +A G D ++ +R R+ +LPGH+G
Sbjct: 6 LIKCSWSPDGLMIAAGSADRFVYVWDTNSR----RILYKLPGHAG 46
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 31.5 bits (68), Expect = 0.90
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQDGKL 502
TL GH +++++ W +D + L + S+D KL
Sbjct: 148 TLEGHNEQVFSLAWSADGKQLATFSRDKKL 177
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 532 VHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSG 696
VH + S V+ A++P S++A G +DN +I++ + +++ + GH+G
Sbjct: 81 VHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIWNAQKFPEVIQI---IKGHTG 132
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 389 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
R + R L GH ++ + W D ++L S D KL+V
Sbjct: 133 RSPTQLERRLVGHRQEVCGLKWSPDHQHLASGGNDNKLLV 172
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +2
Query: 368 SNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVGTATRPTRCTRS 544
+N++ +++ + TL+GH + I+A+ D +VSAS+D L V T CT++
Sbjct: 442 NNIKVWDLVRLECQATLKGHTSLIWAIAVSRDDSVIVSASKDDLLKV-WRTESWVCTQT 499
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
+LRGH+ +Y + W +D R + S S D L V
Sbjct: 96 SLRGHVNCVYQIAWSADCRLICSGSADSTLKV 127
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 607 GGLDNICS---IYSLKTRXGNVRVXRELPGHSGYLFLLPLSSTTTR 735
G L +ICS + LK GN+ + L H+G+L PL T+R
Sbjct: 7 GNLHDICSKGQVLELKQYLGNLNNTQILEEHAGFLGYTPLHQATSR 52
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 322 RCEKSGMRHVAGPGHLEPGA 381
RCE SG H A P H PGA
Sbjct: 489 RCELSGATHFAFPAHFTPGA 508
>SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)
Length = 168
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 322 RCEKSGMRHVAGPGHLEPGA 381
RCE SG H A P H PGA
Sbjct: 70 RCELSGATHFAFPAHFTPGA 89
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/82 (23%), Positives = 31/82 (37%)
Frame = +1
Query: 511 DSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGH 690
D T + VH + +WV P + D I+ ++T L GH
Sbjct: 776 DMDTLSLVHTLKGHKNWVSGVLVTPDSKRIISSSYDKTVKIWDVET----CAFVNSLDGH 831
Query: 691 SGYLFLLPLSSTTTRF*PASGD 756
G++ + ++S R AS D
Sbjct: 832 DGHVRGIAITSDGRRLVSASQD 853
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 511 DSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLK 645
++ T KV R + ++P G ++A G DN IY++K
Sbjct: 214 EAKTLEKVVGYKDRKEEISDIKFSPDGKFLAVGSHDNYVDIYTVK 258
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYS--LKTRXGNVRVXRELPGHSGYLFLLPLSSTTTR 735
V +CA++P+G YVA D +++ L T +R + H + + +S
Sbjct: 91 VKSCAWSPNGEYVASSSADGRVTLWEPRLGTALSKIRAHEDAVTHVEFYPFVSTNSVPVL 150
Query: 736 F*PASGDMXC 765
F SG C
Sbjct: 151 F--TSGGRAC 158
>SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)
Length = 366
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 247 HSSRGTDDRQPAPRTYNTQRTDPSVSNVP 161
H R D APR NTQR + S +N P
Sbjct: 131 HPRRHNDSATNAPRRCNTQRHNDSATNAP 159
>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
Length = 351
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 322 RCEKSGMRHVAGPGHLEPGA 381
+C+ +G H A PGHL PGA
Sbjct: 97 QCQLNGDTHFAFPGHLIPGA 116
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 290 QEAETLKNAIRDARKAACDTSLAQA--TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSD 463
Q A T N + D++KA T A T+++ ++ T+ A+IY H
Sbjct: 24 QTARTYTNHMNDSQKARIYTQHAARIYTNHVNDSQTARIYTQHVNYSQTARIYTQHAARI 83
Query: 464 SRNLVSASQDGKL 502
NLV+ SQ ++
Sbjct: 84 YTNLVNDSQTARI 96
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 493 W*ADRGDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT 648
W A RG +T + H +V AYA +VA GGLD ++ + T
Sbjct: 103 WDATRGFCMSTLRTH-----KDYVQALAYASCKEHVASGGLDKQIFLWDVNT 149
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 425 HLAKIYAMHWGSDSRNLVSASQDGKLIVGTATRP 526
H AKI ++ W DS+++ S+S D + + P
Sbjct: 350 HNAKITSIAWSQDSKHIASSSLDTNIRISCPNNP 383
>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 559 WVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGH 690
WV CA++ Y+ DN+ +++++ V RE GH
Sbjct: 243 WVWDCAFSEDSQYLVTASSDNLARLWNVEAG----EVVREYSGH 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,981,504
Number of Sequences: 59808
Number of extensions: 522388
Number of successful extensions: 1529
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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