Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0622
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.2  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 746 AGQNLVVVEESGSRNR*PEWPGSSRXTR 663
           AG+N ++     +  + P+WP +S+  R
Sbjct: 571 AGENTIIRNSQQAPGQSPDWPSTSQIQR 598


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 232 TDDRQPAPRTYNTQRTDPSVSNVPSI 155
           T+D+  + + Y T  + PS  N+PS+
Sbjct: 370 TNDQDYSSQNYLTVHSFPSTLNIPSV 395


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 728 QPDSDQLPAT*XARCWDIENXAA 796
           + DSD+   +  ARCW +++ AA
Sbjct: 202 ETDSDRRKGS-IARCWSLDSTAA 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 253  VTHSSRGTDDRQPAPRTYNTQRTDP 179
            V HSS+ T  +QP  +    Q+  P
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQP 1517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,805
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)