Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0622
(853 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 82 5e-16
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 82 5e-16
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 82 5e-16
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 35 0.060
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 34 0.10
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 32 0.56
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 31 0.74
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.74
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.97
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.97
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.97
At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-... 31 0.97
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 1.3
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 1.3
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 30 1.7
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.7
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 30 2.2
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 30 2.2
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 29 3.0
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 3.0
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 29 3.0
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 5.2
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 29 5.2
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p... 28 6.9
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 28 6.9
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 28 6.9
At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 6.9
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 81.8 bits (193), Expect = 5e-16
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Frame = +1
Query: 520 TTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT---RXGNVRVXRELPGH 690
T+ K HAI L +WVMTCA++P+G VACGGLD++CSI+SL + + G V V R L GH
Sbjct: 96 TSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGH 155
Query: 691 SGYLFLLP-LSSTTTRF*PASGDMXCALLGHREPGSSS---GQFNGPKPVNVMXVSLA 852
GY+ + + +SGD C L +S G+F +V+ VS++
Sbjct: 156 RGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSIS 213
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +2
Query: 290 QEAETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLRGHLAKIYAMHWG 457
+ L++ +R R DT +A+ ++ G + RTL+GH K+Y++ W
Sbjct: 15 ETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWT 74
Query: 458 SDSRNLVSASQDGKLIVGTA 517
+ +VSASQDG+LIV A
Sbjct: 75 PERNRIVSASQDGRLIVWNA 94
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 81.8 bits (193), Expect = 5e-16
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Frame = +1
Query: 520 TTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT---RXGNVRVXRELPGH 690
T+ K HAI L +WVMTCA++P+G VACGGLD++CSI+SL + + G V V R L GH
Sbjct: 34 TSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGH 93
Query: 691 SGYLFLLP-LSSTTTRF*PASGDMXCALLGHREPGSSS---GQFNGPKPVNVMXVSLA 852
GY+ + + +SGD C L +S G+F +V+ VS++
Sbjct: 94 RGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSIS 151
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 434 KIYAMHWGSDSRNLVSASQDGKLIVGTA 517
++Y++ W + +VSASQDG+LIV A
Sbjct: 5 QVYSLDWTPERNRIVSASQDGRLIVWNA 32
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 81.8 bits (193), Expect = 5e-16
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Frame = +1
Query: 520 TTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT---RXGNVRVXRELPGH 690
T+ K HAI L +WVMTCA++P+G VACGGLD++CSI+SL + + G V V R L GH
Sbjct: 96 TSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGH 155
Query: 691 SGYLFLLP-LSSTTTRF*PASGDMXCALLGHREPGSSS---GQFNGPKPVNVMXVSLA 852
GY+ + + +SGD C L +S G+F +V+ VS++
Sbjct: 156 RGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSIS 213
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +2
Query: 290 QEAETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLRGHLAKIYAMHWG 457
+ L++ +R R DT +A+ ++ G + RTL+GH K+Y++ W
Sbjct: 15 ETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWT 74
Query: 458 SDSRNLVSASQDGKLIVGTA 517
+ +VSASQDG+LIV A
Sbjct: 75 PERNRIVSASQDGRLIVWNA 94
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 35.1 bits (77), Expect = 0.060
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
L+GH ++I + W SD+R L S D KL V
Sbjct: 288 LKGHKSEICGLKWSSDNRELASGGNDNKLFV 318
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 419 RGHLAKIYAMHWGSDSRNLVSASQDGKL 502
RGH+ +Y + W +DSR L+S S+D L
Sbjct: 399 RGHVGPVYQVSWSADSRLLLSGSKDSTL 426
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQDGKL 502
T +GH + + W D ++LVS S+ G++
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLVSGSKSGEI 175
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 356 AQATSNLEPIGRIQM----RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVGTAT 520
A +T N G + + R +TL GH A I + + +D L SAS D +I+ +AT
Sbjct: 15 ANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 422 GHLAKIYAMHWGSDSRNLVSASQDGKLIVGTATRPTRCTR 541
GH + I + W SDS SAS D L + A P C +
Sbjct: 83 GHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLK 122
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSG 696
++ C+++P G+ V G D + I+ +R R +LPGH+G
Sbjct: 275 LLKCSWSPDGTKVTAGSSDRMVHIWDTTSR----RTIYKLPGHTG 315
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQD 493
L+GH I +HW SD +VSAS D
Sbjct: 92 LKGHKNAILDLHWTSDGSQIVSASPD 117
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLKTR 651
V++ ++P+G ++A GG DN C I+ L+ R
Sbjct: 175 VLSVDFSPNGYHLASGGEDNQCRIWDLRMR 204
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLK 645
V + A++P+G Y+A G LD I+S+K
Sbjct: 544 VYSLAFSPNGEYIASGSLDKSIHIWSIK 571
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 514 SHTTNK-VHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSL 642
SH N V + +S V CA++PS S +A G D I+S+
Sbjct: 251 SHIPNSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWSI 294
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVGTATRPTRC 535
++ H I AM + D R L SA +DG L V + RC
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERC 286
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVGTATRPTRC 535
++ H I AM + D R L SA +DG L V + RC
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERC 286
>At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-box
domain PF:00646
Length = 295
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -2
Query: 399 ICMRPIGSRFE----VAWASDVSHAAFLASLIAF-LRVSASWRRLSSSFMINTPSH 247
IC P+ R++ V++ASD + L F L SW+R+++ F + PSH
Sbjct: 183 ICHDPVNDRYKLLCTVSYASDNDLQNLKSELWIFVLEAGGSWKRVANEFPHHVPSH 238
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 389 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
R+Q L GH +++ + W D R L S D +L+V
Sbjct: 285 RVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLV 324
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLKTR 651
V + ++P+G ++A GG DN C I+ L+ R
Sbjct: 426 VFSVNFSPNGYHLASGGEDNQCRIWDLRMR 455
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 553 SSWVMTCAYAPSGSYVACGGLDNICSIYSL 642
S + T + P G +V GGLDN+ ++ L
Sbjct: 142 SRGISTIRFTPDGRWVVSGGLDNVVKVWDL 171
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSL 642
+ T ++P G +V GGLDN+ ++ L
Sbjct: 94 ISTIEFSPDGRWVVSGGLDNVVKVWDL 120
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 416 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 508
L GH +++ + W D+R L S D +L V
Sbjct: 331 LAGHKSEVCGLKWSYDNRELASGGNDNRLFV 361
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 386 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDG 496
GR+ ++ +L GH +++ M W L S DG
Sbjct: 266 GRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDG 302
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 556 SWVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSGYLFLLPLSSTTTR 735
S V++ A +P G Y+A G D ++ L T R L GH+ ++ L S +
Sbjct: 542 SMVLSLAMSPDGRYMASGDEDGTIMMWDLST----ARCITPLMGHNSCVWSLSYSGEGSL 597
Query: 736 F*PASGDMXCAL 771
ASG C +
Sbjct: 598 L--ASGSADCTV 607
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 413 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVGTATRPTRCT 538
TLRGH A + ++W D L S S D + + R CT
Sbjct: 113 TLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWN-MRTGMCT 153
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 583 PSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHSGYL----FLLPLSST 726
P +A GGLDN +YS R G EL GH+ ++ F LPL +T
Sbjct: 188 PGRFALALGGLDNKIKLYS-GERTGKFTSVCELKGHTDWIRSLDFSLPLHTT 238
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLKTR 651
++ CA++ G Y+ GG D++ ++S++ R
Sbjct: 348 LLCCAWSMDGKYLLTGGEDDLVQVWSMEDR 377
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 422 GHLAKIYAMHWGSDSRNLVSASQD 493
GH IYA+ W DS+ +++ S D
Sbjct: 94 GHKGSIYAVSWSPDSKRVLTVSAD 117
>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 565
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 845 DTNMTFT-GFGPLNCPELLPGSRC 777
D N+ FT G G NCP+ P SRC
Sbjct: 350 DDNLFFTIGLGLDNCPKKFPKSRC 373
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +1
Query: 559 WVMTCAYAPSGSYVACGGLDNICSIYSLKTRXGNVRVXRELPGHS 693
+V++ A++P+G +ACG +D ++ + ++ +L GH+
Sbjct: 160 FVLSVAWSPNGKRLACGSMDGTICVFDV----DRSKLLHQLEGHN 200
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 553 SSWVMTCAYAPSGSYVACGGLDNICSIYSLKTR 651
+SWV++ +P G +A G D ++ LK R
Sbjct: 243 TSWVLSVDASPDGGAIATGSSDRTVRLWDLKMR 275
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 28.3 bits (60), Expect = 6.9
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = +1
Query: 562 VMTCAYAPSGSYVACGGLDNICSIYSLKTR 651
++ C+++ G Y+ GG D++ ++S++ R
Sbjct: 348 LLCCSWSMDGKYILTGGEDDLVQVWSMEDR 377
>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam domain PF03171 2OG-Fe(II)
oxygenase superfamily
Length = 394
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 257 HRHTQLTWNRRSTTGAAHVQHATHRSFCQQCPFDRRSSDFRAI 129
HR L W R S H S+C +C ++R R+I
Sbjct: 337 HRVNMLLWCRSSVFRELKTHHKDFSSWCGECFCEKRDEKVRSI 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,622,705
Number of Sequences: 28952
Number of extensions: 347011
Number of successful extensions: 1037
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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