Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0621
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    33   0.054
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    30   0.38 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    27   2.7  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    27   2.7  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   3.5  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   4.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   6.2  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   8.2  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 436 DTDGSHLRPLDYSIGEKNKPFKQTWEKWW 522
           DTD + + P+ +S+    KP  + W KWW
Sbjct: 671 DTDEAKVEPIAHSVDYTFKPTVEWWNKWW 699


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 364  YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTW 510
            Y  +  +C ++   +S  ++ VVA  D   ++ +DY +      FK+TW
Sbjct: 862  YTKRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKETW 910


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 349 KKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTWEKWWA 525
           +KGG +  ++E  N          E  +A   G   RP D+++ + +KP + +W+  W+
Sbjct: 283 EKGGHFYAKLEPWNKGNRELIAEGEGSLAALTGKK-RPGDFALWKASKPGEPSWDSPWS 340


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 495 LQADLGKVVGAYFVEWGVYPRKFPVDRVPVPKPDSFALRLHSD 623
           +Q  + K   A+F +  + P    VDR  + +PD+ AL   +D
Sbjct: 68  VQGSIDKADSAWFADGAISPCYNLVDRHAIARPDAVALIYEAD 110


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 323 LPAPLQTSFLSSRTLDLSAASPVT 252
           +PAPL T FL   +L+ + ++P+T
Sbjct: 408 MPAPLATRFLQEHSLNGTKSAPIT 431


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 460 PLDYSIGEKNKPFKQTWEKWWALTSSNGVCILESSL 567
           P+D+++ E +      W ++ +L  SNG  + E  L
Sbjct: 253 PIDWNVSETHPNVLDKWNEFISLLKSNGYLVQEIQL 288


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 75   YHPMPHNWLSHRSSLR 28
            YHP PH +LS++  LR
Sbjct: 1036 YHPPPHGYLSYKILLR 1051


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 433 ADTDGSHLRPLDYSIGEKNKPFKQTWEKWW 522
           A+ D +  + ++Y   EKNK  +  W+K W
Sbjct: 266 ANKDENIKKIINYQTEEKNKNKQSKWQKLW 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,002
Number of Sequences: 5004
Number of extensions: 52319
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)