Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0621
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0509 + 10051965-10052079,10052467-10052672 29 2.8
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 29 2.8
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 2.8
09_01_0164 + 2424158-2424164,2424165-2424536,2428623-2428807,242... 29 3.7
02_03_0256 - 16917212-16917256,16917845-16917879,16918396-169184... 29 3.7
07_03_1350 - 25955624-25955842,25955877-25955922,25956456-25956751 29 4.9
02_03_0099 + 15206282-15206917 29 4.9
02_04_0270 - 21439788-21441680 28 6.4
>09_02_0509 + 10051965-10052079,10052467-10052672
Length = 106
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/82 (28%), Positives = 33/82 (40%)
Frame = +1
Query: 310 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKN 489
+ AGS+ AA V M+ N+ S G E VVA+ D R +
Sbjct: 7 AAAGSSCLAAVIVVAAAMSLMRPRSSNASSASGVRGQEDVVAECDMGTSRA--DATAAAP 64
Query: 490 KPFKQTWEKWWALTSSNGVCIL 555
P +WWA+ +N V +L
Sbjct: 65 PPVSSKRLRWWAVVLANIVVVL 86
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 197 YNQLVTKKDAADVSVNWNV*PATRPTSPESCSIRRKSGAVPAAPHRPLSK 346
Y L+T + +V +V P T+PT+P S + S P P +P+ +
Sbjct: 148 YRSLITDVQPSIQAVP-SVAPTTQPTTPTSTPLPAPSAMAPGQPQQPIQQ 196
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 295 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 462
++E+WSGA SA K KK + ++ DG S VEIV+ + L
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676
Query: 463 LDYSIGEKN 489
++ S E N
Sbjct: 677 VELSFAENN 685
>09_01_0164 +
2424158-2424164,2424165-2424536,2428623-2428807,
2429045-2429200
Length = 239
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 421 EIVVADTDGSHLRPLDYSIGEKNKPFKQTWEKWWALTSSNGV 546
EI V +HL P + + + + FK WWA S GV
Sbjct: 138 EITVEQMFNAHLVPEQHRVRQASSEFKDFAIMWWAGLSDEGV 179
>02_03_0256 -
16917212-16917256,16917845-16917879,16918396-16918438,
16919046-16919456
Length = 177
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 421 EIVVADTDGSHLRPLDYSIGEKNKPFKQTWEKWWALTSSNGV 546
E+ V +HL P + + + + FK WWA+ + +GV
Sbjct: 48 EMTVEQKFSAHLIPDQHRVRQASSEFKDFAIMWWAMLADDGV 89
>07_03_1350 - 25955624-25955842,25955877-25955922,25956456-25956751
Length = 186
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 207 SWL*AVAAWLTSTIANVRSPQPRFGXXW 124
SWL AV AW +R P+PR W
Sbjct: 77 SWLDAVRAWAKLACLKLRPPEPREKVAW 104
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 277 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 444
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>02_04_0270 - 21439788-21441680
Length = 630
Score = 28.3 bits (60), Expect = 6.4
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
Frame = +1
Query: 118 GPPXXTEPRLGRAHVRDRRSQPSGHSLQPAXXXXXXXXXXXXXXXVTGDAADKS------ 279
GP P GRA R + S HS+QP DA D+S
Sbjct: 155 GPRVFAAPDTGRASARFF-PKGSVHSVQPYGLVNGGLESTLAARGNPSDATDRSHRHRLQ 213
Query: 280 --RVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEG---VEIVVADTD 444
R KKE+ G A +++GG ++ L D SS+G +IV +D +
Sbjct: 214 GVRENAAKKEMRGVGGDREPAVEYIERGGVWEPVSNLDGGDDDDSSDGGWNDDIVTSDLE 273
Query: 445 GS---HLRPLDYSIGEKNKPFKQTWEKWWALTS 534
LRP ++ +++ K +W A TS
Sbjct: 274 DMGDVDLRPEQRAMVGRDRR-KDNVARWEATTS 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,418
Number of Sequences: 37544
Number of extensions: 411613
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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