Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0621
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55916| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   31   1.2  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              29   5.0  
SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_55916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 460 PLDYSIGEKNKPFKQTWEKWWALTSSNGVCILESSLWTAFRFRNLTHLLYGFIPICG 630
           P DY+I +++  + + W K W ++ +   C + S     F F+  TH +  F  +CG
Sbjct: 158 PSDYAILQQDLHYLEQWAKRWQMSFAPKKCYVMSITLKRFPFKVPTHYVVLFWKVCG 214


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 346 VKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 453
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 152 ERTFAIVEVNQAATAYNQLVTKKDAADVSVNWNV*PATRPTSPESCSIRRKSGAVPAAPH 331
           +RT A  +V + A++Y   +  +    +        A  P SPES   R ++   P  PH
Sbjct: 51  QRTTAQRDVKEDASSYRSAIEIQTLCRIQTRSQTMAARNPESPESTPRRNETIETPRTPH 110

Query: 332 R 334
           +
Sbjct: 111 Q 111


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 74  IIRCPITGCLTEVPCAQSRSSC 9
           II  P+TGC+ + PC   ++ C
Sbjct: 282 IISIPVTGCVAKDPCLMGQNDC 303


>SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/95 (22%), Positives = 41/95 (43%)
 Frame = -2

Query: 486 FLTNRIIERPQMATISVSYYDFDALARAASV*VAELDLHLVSSALLHFESGRCGAAGTAP 307
           FL  R+  +  + T  + Y   DA   A    V   D  +  + L  + +      G +P
Sbjct: 325 FLYERLWFKQNICTADIKY-GIDAEPAARDAYVKATDNTVTETGL--WINKMYPHLGASP 381

Query: 306 DFLLIEQDSGLVGRVAGHTFQLTETSAASFLVTSW 202
           D L+++++SG  G +     +L +T     +++ W
Sbjct: 382 DGLVVDKESGTAGILEIKCLKLLKTRTVEEVISGW 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,864
Number of Sequences: 59808
Number of extensions: 418858
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)