Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0621
(718 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF491813-1|AAM09558.1| 2113|Homo sapiens Down syndrome cell adhe... 33 1.0
AF334384-1|AAL57166.1| 2053|Homo sapiens Down syndrome cell adhe... 33 1.0
AF304305-1|AAN32614.1| 1842|Homo sapiens Down syndrome cell adhe... 33 1.0
AF304304-1|AAN32613.1| 2053|Homo sapiens Down syndrome cell adhe... 33 1.0
AB032958-1|BAA86446.2| 2092|Homo sapiens KIAA1132 protein protein. 33 1.0
AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down synd... 31 4.1
AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhe... 31 4.1
AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhe... 31 4.1
AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhe... 31 4.1
AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhe... 31 4.1
>AF491813-1|AAM09558.1| 2113|Homo sapiens Down syndrome cell adhesion
molecule 2 protein.
Length = 2113
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 307 WSGAGSATSAAF---KVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
W G + +S ++++ Y++++ CNS GC +E + D DGS + P+ +
Sbjct: 1585 WQGLRANSSGEVFLTELREATWYELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQ 1643
Query: 478 GE 483
GE
Sbjct: 1644 GE 1645
>AF334384-1|AAL57166.1| 2053|Homo sapiens Down syndrome cell adhesion
molecule DSCAML1 protein.
Length = 2053
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 307 WSGAGSATSAAF---KVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
W G + +S ++++ Y++++ CNS GC +E + D DGS + P+ +
Sbjct: 1525 WQGLRANSSGEVFLTELREATWYELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQ 1583
Query: 478 GE 483
GE
Sbjct: 1584 GE 1585
>AF304305-1|AAN32614.1| 1842|Homo sapiens Down syndrome cell adhesion
molecule like-protein 1b protein.
Length = 1842
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 307 WSGAGSATSAAF---KVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
W G + +S ++++ Y++++ CNS GC +E + D DGS + P+ +
Sbjct: 1314 WQGLRANSSGEVFLTELREATWYELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQ 1372
Query: 478 GE 483
GE
Sbjct: 1373 GE 1374
>AF304304-1|AAN32613.1| 2053|Homo sapiens Down syndrome cell adhesion
molecule like-protein 1a protein.
Length = 2053
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 307 WSGAGSATSAAF---KVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
W G + +S ++++ Y++++ CNS GC +E + D DGS + P+ +
Sbjct: 1525 WQGLRANSSGEVFLTELREATWYELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQ 1583
Query: 478 GE 483
GE
Sbjct: 1584 GE 1585
>AB032958-1|BAA86446.2| 2092|Homo sapiens KIAA1132 protein protein.
Length = 2092
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 307 WSGAGSATSAAF---KVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
W G + +S ++++ Y++++ CNS GC +E + D DGS + P+ +
Sbjct: 1564 WQGLRANSSGEVFLTELREATWYELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQ 1622
Query: 478 GE 483
GE
Sbjct: 1623 GE 1624
>AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down
syndrome cell adhesion molecule protein.
Length = 1029
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 364 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
Y++Q+ +CNS GC+ + + DGS + PL S+
Sbjct: 561 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSV 597
>AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhesion
molecule splice variant protein.
Length = 1746
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 364 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
Y++Q+ +CNS GC+ + + DGS + PL S+
Sbjct: 1296 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSV 1332
>AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 2012
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 364 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
Y++Q+ +CNS GC+ + + DGS + PL S+
Sbjct: 1544 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSV 1580
>AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 1896
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 364 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
Y++Q+ +CNS GC+ + + DGS + PL S+
Sbjct: 1530 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSV 1566
>AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhesion
molecule isoform CHD2-42 precursor variant protein.
Length = 2023
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 364 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSI 477
Y++Q+ +CNS GC+ + + DGS + PL S+
Sbjct: 1555 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSV 1591
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.134 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,041,008
Number of Sequences: 237096
Number of extensions: 2174226
Number of successful extensions: 13147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13147
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -