Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0621
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 156 RSPQPRFGXXWRAAGADGERGHREYERYHPMPHNWL 49
           RSP+ R+G      G  G   +++Y+R +P P   L
Sbjct: 43  RSPRARYGGGGGGGGGGGRGRNQQYDRENPQPSKCL 78


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 578 NAVHRELSRIHTPFDEVSAHHFSQVCLKGLFFSPIE*SRGLKWL 447
           N  H+ +  +    D+++A H+ Q C K     PIE +  + WL
Sbjct: 272 NKYHQIIGYLKNEEDQLTAEHYGQFCRKIYRLLPIEQADLMSWL 315


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 567 VDRVPVPKPDSFALRLHSDLW 629
           +D +P P P  +A+RL SD W
Sbjct: 132 IDDLPTPPPPIYAVRLTSDSW 152


>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 467  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 291
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 290  SRTLDLSAASPV 255
            + + D+  AS +
Sbjct: 1004 TNSTDILPASRI 1015


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,587
Number of Sequences: 27780
Number of extensions: 308327
Number of successful extensions: 881
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)