Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0621
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             31   0.76 
At3g59760.2 68416.m06668 cysteine synthase, mitochondrial, putat...    27   9.4  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 319 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHL 456
           G+    +  +K GG   + VEL +SDG  S + V  V+  +DGS+L
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSYL 181


>At3g59760.2 68416.m06668 cysteine synthase, mitochondrial, putative
           / O-acetylserine (thiol)-lyase, putative /
           O-acetylserine sulfhydrylase, putative similar to
           SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
           4.2.99.8) (O- acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
          Length = 432

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 663 NFFQTVIDAITTTNRNEAVEQMSQVSEPER---GPQGTF*DTHPIRRSKRPPLFPSLLEG 493
           N  Q ++D +   +  EA+E   Q++  E    G          I+ +KRP     L+  
Sbjct: 342 NLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAV 401

Query: 492 LIFLTNRIIERPQMATIS 439
            +F + R I RP+ +++S
Sbjct: 402 SLFASGRDIYRPRCSSLS 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,226
Number of Sequences: 28952
Number of extensions: 298990
Number of successful extensions: 800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)