Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0620
         (862 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2; ...    38   0.43 
UniRef50_Q7ND80 Cluster: WD-repeat protein; n=5; Cyanobacteria|R...    34   5.3  
UniRef50_Q965J0 Cluster: Temporarily assigned gene name protein ...    33   7.0  
UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_Q8G4F7 Cluster: DNA gyrase subunit B; n=4; Bifidobacter...    33   9.3  

>UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 790

 Score = 37.5 bits (83), Expect = 0.43
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
 Frame = -2

Query: 342 PDNSQSSDTSGSAADPVR--DTCWCM-YEAYSLAHIQDMVSQIPPSSIR*YSTQDDSRLF 172
           PD+ QS+DT        R  DT     +++   AH QD++S  PPSS    + ++ S L 
Sbjct: 180 PDSKQSADTQNHLLPQNRHYDTGNSKAFQSQIQAHKQDVISLSPPSSAG--TRRNSSVLL 237

Query: 171 SGRQRLRKTQLRINATPLVTQSRFSQVRCAELSLHQCQIKYE 46
             R   R+    +   P+++QS   + R  E+ + +  +K E
Sbjct: 238 HDRHDNRRNTATLADVPIISQSCTPESRYMEIVIEKIAVKNE 279


>UniRef50_Q7ND80 Cluster: WD-repeat protein; n=5; Cyanobacteria|Rep:
            WD-repeat protein - Gloeobacter violaceus
          Length = 1188

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -3

Query: 341  RTILNHLIHQAVQQTLSGTRVGVCTRPIL*HTSRIWSVRFRQAPSGNILLKTTADCSLGG 162
            RT+++    Q V+  L     G C R +  HTS++WSV F  +P G  ++  + D ++  
Sbjct: 1086 RTVVSSSHDQTVR--LWDAATGECLRTLTGHTSQVWSVAF--SPDGRTVISGSQDETIRL 1141

Query: 161  RDS--GKP 144
             DS  GKP
Sbjct: 1142 WDSHTGKP 1149


>UniRef50_Q965J0 Cluster: Temporarily assigned gene name protein
           218, isoform a; n=3; Caenorhabditis|Rep: Temporarily
           assigned gene name protein 218, isoform a -
           Caenorhabditis elegans
          Length = 1136

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 602 QLHKLPVAVATTSTPKSDSINVVRLPEVXTPDVDITNLDPLDCCDMSEFIQPS 760
           Q   LPV+  ++ST  S    + R+P +  PDV    LD  +C D    + PS
Sbjct: 212 QFDTLPVSFRSSSTSSSTG-GLPRIPNIPVPDVPFIPLDDDNCYDEIMLVTPS 263


>UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 470

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 337 VRKKVCVKMTSVHPCRHFLDSITCSHKVCTKIWRSIYLLKF 459
           V  + CV  T +HP      S +C H+ C    RS++   F
Sbjct: 190 VVSRTCVACTEIHPVTRLAKSPSCGHEYCQDCLRSLFTSSF 230


>UniRef50_Q8G4F7 Cluster: DNA gyrase subunit B; n=4;
           Bifidobacterium|Rep: DNA gyrase subunit B -
           Bifidobacterium longum
          Length = 772

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 252 LENRPRTYTNTCPGQGLLHCLMYQMIENCPEESL 353
           +  RP  Y  T   QGL+HCL +++I+N  +E+L
Sbjct: 20  VRKRPGMYIGTTDSQGLMHCL-WEIIDNSVDEAL 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,648,113
Number of Sequences: 1657284
Number of extensions: 19910955
Number of successful extensions: 45692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45686
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)