Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0620
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   2.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   6.0  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    26   6.0  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 600 FSCAYRGPCV*IWSIDEKPHSSNVL 526
           F C  +GPC+ I+ + E  H S+++
Sbjct: 30  FLCCAQGPCLRIYDVSESRHESDLI 54


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = +3

Query: 210  WSLAESD*PYPGCVLENRPRTYTNTCPGQGLLHCLMYQMIE---NCPEESLRKDDVCSPV 380
            + L  SD  +   V+    + Y    P   LL   M+++ E   N P +S    ++C  +
Sbjct: 1127 YDLLSSDEEFDVHVIAGLLKLYLRNLP-TNLLDTSMHKLFELLPNVPNDSAALGELCDVI 1185

Query: 381  SSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRN 482
            S L   N+    S+   L   +  E   +  +RN
Sbjct: 1186 SKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRN 1219


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 297 GLLHCLMYQMIENCPEESLRKDDVCSPV--SSLSGFNYMFSQSMYEDLEEH 443
           G+ HC M    E     S+ K +V + V  SSL  F+     S+Y D+++H
Sbjct: 785 GITHCSMND--EGYTTISIPKANVLNSVYNSSLKNFSSSNDTSVYHDVQDH 833


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 211 GAWRNLTDHILDVC*RIGLVHTPTRVPDRVCCTA*CIR*LRIVRKKVCVKMTSVHPCRHF 390
           G+WR    ++LD C  +  +       +   C A C   LR + K  CVK  S    R  
Sbjct: 113 GSWRWYDQYMLDCCRSLSDIEKDGVTLEEFSCLANC-NGLRTITK--CVKDVSFDEFRK- 168

Query: 391 LDSITCS 411
            D I+CS
Sbjct: 169 -DVISCS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,865,258
Number of Sequences: 5004
Number of extensions: 85470
Number of successful extensions: 223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)