Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0620
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592...    33   0.39 
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    29   4.8  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    29   6.3  
11_06_0754 - 26935647-26937780,26940890-26941827                       28   8.3  
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    28   8.3  
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981...    28   8.3  

>08_02_1473 -
           27358162-27358275,27358968-27359024,27359102-27359245,
           27359770-27359934,27360020-27360208,27360301-27360535,
           27360826-27360932,27361020-27361103,27361185-27361695,
           27361793-27361854,27363373-27363456
          Length = 583

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 512 PLVNMSTLLECGF-SSILQIYTHGPRYAHEKQLHKLPVAVATTSTPKSDS 658
           PL N  +LL+ GF      +Y  GP   H +++ ++ V V   +TP   S
Sbjct: 79  PLGNPFSLLDQGFLERAAAVYGEGPHITHPREVRRIDVEVKDNNTPAGSS 128


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 357 KDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYFKSKCCQVH 512
           KD VC      S FN +  +S ++D+EE L  +   E+ L  +   K C++H
Sbjct: 450 KDGVCLEKIGHSIFNELARRSFFQDVEETLMSKYSLEYNLCRF--RKMCKIH 499


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 593 HEKQLHKLPVAVATTSTPKSDSINVVRLPEVXTPDVDITNLD 718
           HEKQLH L  A+    T  +D IN V  P    P +     D
Sbjct: 739 HEKQLHALANALLERETLTADEINKVVHPYQEEPQLSFQEED 780


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 85  TPYLRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHI 240
           T  L KSR   QW  +N  LG+     P  +    + ++L D ++ NL++H+
Sbjct: 416 TSILEKSRKMEQWGYVNKSLGYNLMKNPTLEG---IKQVL-DLSYNNLSEHL 463


>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 657 ESDLGVDVVATATGSLCSCFSCAYRGP 577
           ++D GVDV A   GSLC   S  +RGP
Sbjct: 46  DTDAGVDVDARLVGSLCRVLS-DFRGP 71


>07_03_1570 +
           27797315-27797409,27797519-27797551,27798135-27798199,
           27798406-27798493,27798579-27798651,27798975-27799081,
           27799595-27799637,27799760-27799816,27799905-27799981,
           27800221-27800266,27800364-27800410,27800498-27800571,
           27800656-27800711,27800885-27801011,27801133-27801206
          Length = 353

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 251 HTSRIWSVRFRQAPSGNILLKTTADCSLGGRD--SGKPNFVLMQLH 120
           H     +VRF +  SGN++L  +ADCS+   D  +GKP   L   H
Sbjct: 50  HKESCRAVRFVE--SGNVILTGSADCSILASDVETGKPIARLEDAH 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,603,430
Number of Sequences: 37544
Number of extensions: 571125
Number of successful extensions: 1320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)