Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0620
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   1.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.3  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 454 STGKCSSKSSYILCENM*LNPESDDTGEQT 365
           ST KC +  ++I+C +  L+   +DT E T
Sbjct: 124 STDKCENGLNFIICFSKLLSDMYEDTFEDT 153


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 560 LQIYTHGPRYAHEKQ---LHKLPVAVATTST 643
           ++ +T GPR +HE Q   L KL   V ++ST
Sbjct: 297 VRCFTGGPRKSHESQCPMLQKLEKPVLSSST 327


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +2

Query: 653  DSINVVRLPEVXTPDVDITNLDPLDCCDMSEFIQPS*GHNATSV*NWDNRNRLSIDISHG 832
            D +  +  P    P V  +N +  D       I+    H+      WD R  +  +++H 
Sbjct: 1641 DELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHST-----WDPRRHMYEELNHC 1695

Query: 833  GRNKQIPVP 859
              N++ P P
Sbjct: 1696 APNRRCPPP 1704


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 189 DDSRLFSGRQRLRKTQLRINATPLVTQSRF 100
           +   LFS +Q+ +   +++  TP V  SRF
Sbjct: 510 ETKELFSSQQKTKNNLMKLETTP-VLPSRF 538


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 677 PEVXTPDVDITNLDPLDC 730
           PE+  P +DI+N    DC
Sbjct: 174 PEIELPQLDISNNYTTDC 191


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/35 (20%), Positives = 21/35 (60%)
 Frame = +3

Query: 381 SSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNY 485
           +++ G +Y  +   ++D++  LP+++  +  +R Y
Sbjct: 659 ANIEGTSYFLNDYKHKDVDVTLPLDLHIQNAIREY 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,242
Number of Sequences: 438
Number of extensions: 5842
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)