Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0620
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05880.1 68414.m00616 expressed protein                             30   1.7  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    29   4.0  
At5g07220.1 68418.m00823 BAG domain-containing protein contains ...    28   7.0  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    28   9.2  
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta...    28   9.2  
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta...    28   9.2  

>At1g05880.1 68414.m00616 expressed protein
          Length = 426

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 373 HPCRHFLDSITCSHKVCTKIWRS 441
           HP ++ L S++C H++CT+ W S
Sbjct: 101 HPHKN-LASVSCGHRICTRCWTS 122


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 272 CTRPIL*HTSRIWSVRFRQAPSGNILLKTTADCSL 168
           C  P++ H S +WS+ +  +  G++L   +ADC++
Sbjct: 575 CITPLMGHNSCVWSLSY--SGEGSLLASGSADCTV 607


>At5g07220.1 68418.m00823 BAG domain-containing protein contains
           Pfam:PF02179 BAG domain
          Length = 303

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 342 PDNSQSSDTSGSAADPVRDTCWCMYEAYSLAHIQDMVSQIPP 217
           P NS +S +SG+ A  V  + W M+++ S A   + V  +PP
Sbjct: 256 PRNSNASSSSGTPA--VVASKWEMFDSASTAKAAETVKPVPP 295


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 8   MFFSKTWVCSGYFSYLIWHWCKLSSAH 88
           + FS T++ S YFSYLI H   L S+H
Sbjct: 59  VLFSGTFLLSSYFSYLI-HSLSLLSSH 84


>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1077

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  SGYFSYLIWHWCKLSSAHLT*ENLD 109
           S Y S ++W W K+S +H    NL+
Sbjct: 771 STYHSLIVWRWNKISKSHFYLGNLE 795


>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1108

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  SGYFSYLIWHWCKLSSAHLT*ENLD 109
           S Y S ++W W K+S +H    NL+
Sbjct: 771 STYHSLIVWRWNKISKSHFYLGNLE 795


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,436,738
Number of Sequences: 28952
Number of extensions: 453501
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)