Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0619
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.0  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 238 PDQRPVWCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIY----KRHRFDAWYG 390
           P+QR VW  + +   K+ N++   LLTD+  +A K  +  Y       + +AW G
Sbjct: 459 PEQRDVWNIQQSEVDKEVNIR--TLLTDEALRAPKREQSPYWAGHSEQKHEAWRG 511


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   GNSKDTIEMQKLIIFALVV 58
           G SK TI+MQ L+IFAL++
Sbjct: 222 GMSKKTIQMQHLLIFALIL 240


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 618 IENVKKLALSTQIAYSNLARNRFDKNLGAIIQFI 719
           ++N  +L ++     S+L R  FDKNL   ++FI
Sbjct: 562 VQNTCELTMTKGYGNSHLTRWHFDKNLNKCVKFI 595


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,853
Number of Sequences: 27780
Number of extensions: 300842
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)