BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0619 (819 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 3.0 AL132858-1|CAB60474.1| 325|Caenorhabditis elegans Hypothetical ... 28 7.0 Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 9.2 >U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform a protein. Length = 1175 Score = 29.5 bits (63), Expect = 3.0 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1 Query: 238 PDQRPVWCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIY----KRHRFDAWYG 390 P+QR VW + + K+ N++ LLTD+ +A K + Y + +AW G Sbjct: 459 PEQRDVWNIQQSEVDKEVNIR--TLLTDEALRAPKREQSPYWAGHSEQKHEAWRG 511 >AL132858-1|CAB60474.1| 325|Caenorhabditis elegans Hypothetical protein Y113G7A.1 protein. Length = 325 Score = 28.3 bits (60), Expect = 7.0 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = +2 Query: 2 GNSKDTIEMQKLIIFALVV 58 G SK TI+MQ L+IFAL++ Sbjct: 222 GMSKKTIQMQHLLIFALIL 240 >Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical protein C34F6.1 protein. Length = 1043 Score = 27.9 bits (59), Expect = 9.2 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +3 Query: 618 IENVKKLALSTQIAYSNLARNRFDKNLGAIIQFI 719 ++N +L ++ S+L R FDKNL ++FI Sbjct: 562 VQNTCELTMTKGYGNSHLTRWHFDKNLNKCVKFI 595 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,998,853 Number of Sequences: 27780 Number of extensions: 300842 Number of successful extensions: 731 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 730 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 2019417216 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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