Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0617
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 292 4e-80
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 163 3e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 161 1e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 155 5e-39
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.1
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 27 4.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.1
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 26 5.4
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 5.4
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.2
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 7.2
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 9.5
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 9.5
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 292 bits (716), Expect = 4e-80
Identities = 133/210 (63%), Positives = 157/210 (74%)
Frame = +2
Query: 74 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 253
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 254 ARAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 433
RA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 434 RKESESCDCLQGFQLTHSLGGGXGSVWAPSSSQRFREEYPDRIMNTYSVVPSPKVSDTVV 613
R+E+E+CD LQGFQLTHSLGGG GS + REEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 614 RTIQCDSLSSPAS*KHRRNYCIDNXALYDI 703
+CIDN AL I
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSI 210
Score = 36.7 bits (81), Expect = 0.004
Identities = 27/96 (28%), Positives = 41/96 (42%)
Frame = +1
Query: 511 MGTLLISKIP*RVPRQNHEHILSSPLAQSIRHCRPNHTMRLSQFTS*LKTQTKLLHRQRG 690
MGTLL+SKI P + +P +S + LS ++ +
Sbjct: 147 MGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQL-VENSDETFCIDNE 205
Query: 691 SIRHLLSEFSNCPHPXYGDLNHLVSFTMSGVTTCLK 798
++ + + P Y DLNHLVS M+GVTT +
Sbjct: 206 ALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFR 241
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 163 bits (396), Expect = 3e-41
Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +2
Query: 74 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGQ 247
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E G+
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 248 VRARAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 427
R+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 428 VVRKESESCDCLQGFQLTHSLGGGXGSVWAPSSSQRFREEYPDRIMNTYSVVPSPKVSDT 607
+R+ +++C LQGF + HS GGG GS + +R EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 608 VVRTIQCDSLSSPAS*KHRRNYCIDNXALYDICFPN 715
VV + + +DN + YDIC N
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRN 216
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 161 bits (390), Expect = 1e-40
Identities = 82/220 (37%), Positives = 120/220 (54%), Gaps = 6/220 (2%)
Frame = +2
Query: 74 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 235
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 236 SGGQVRARAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 415
G+ R+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 416 SVLDVVRKESESCDCLQGFQLTHSLGGGXGSVWAPSSSQRFREEYPDRIMNTYSVVPSPK 595
SVL+ +R+ +++C LQGF + HS GGG GS +R EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 596 VSDTVVRTIQCDSLSSPAS*KHRRNYCIDNXALYDICFPN 715
VS +VV + + +DN A YDIC N
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRN 220
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 155 bits (377), Expect = 5e-39
Identities = 73/183 (39%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
Frame = +2
Query: 77 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 256
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 257 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 430
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 431 VRKESESCDCLQGFQLTHSLGGGXGSVWAPSSSQRFREEYPDRIMNTYSVVP-SPKVSDT 607
+ +E++ D L+GF L HS+ GG GS +R + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 608 VVR 616
VV+
Sbjct: 182 VVQ 184
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 462 YRASNLHIPSVAAPGPYGHPPHLKDSVKSTPTES*THTQ*SPRPKY 599
+R + + P+ + G Y PPH+ DS S THT P Y
Sbjct: 485 HRQISPYYPTSSVYGVYESPPHMSDSRISRQHMPLTHTTYEPSAPY 530
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 377 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 466
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 113 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 214
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 517 CPYGPGAATEGMCKL 473
C YGP A++G+C+L
Sbjct: 414 CGYGPSGASDGLCEL 428
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 308 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 409
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 513 GHPPHLK-DSVKSTPTES*THTQ*SPRPKYQTLSSEPYNATLSVHQLVE 656
G P+ DS+ STPT S T PK +T +P ++ SV L++
Sbjct: 7 GQDPNFSYDSILSTPTPSARRTIGPRAPKSKTTYHKPPSSIESVSTLIQ 55
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 521 SSSQRFREEYPDRI 562
+ SQR RE+YPDRI
Sbjct: 16 TESQRIREKYPDRI 29
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 364 SAGLSEDEVVRTEDLSERSRADRVHGAGLQVDEDG 260
S G+S E+ R +D S+ R +RVH DEDG
Sbjct: 238 STGISGFEINRQKDTSDMKRNNRVH----MDDEDG 268
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 57 KITYTK*GKSFIYRPANVV 113
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 477 LHIPSVAAPGPYGHPPHLKDSVKSTPTES*THT 575
L +P+ AAP +PP + +S P ES THT
Sbjct: 1179 LPVPAPAAPQTL-NPPSVSTVQQSKPIESNTHT 1210
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 517 CPYGPGAATEGMCKLE 470
C YGP ++G+C+L+
Sbjct: 414 CGYGPSGTSDGLCELQ 429
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 329 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 460
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 366 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 271
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 471 SNLHIPSVAAPGPYGHPPHLKDSVKSTPTES 563
SN P P P HLKD+++++ T S
Sbjct: 177 SNGSFPRQTNTAPLNPPVHLKDNIRNSATPS 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,212
Number of Sequences: 5004
Number of extensions: 68136
Number of successful extensions: 209
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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