Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0617
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 657 FQLAGELRESHCMVRTTVS 601
           F   G +RESHCM  T  S
Sbjct: 68  FGCCGAIRESHCMTITFAS 86


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +1

Query: 610 RPNHTMRLSQFTS*LKTQTKLLHRQRGSIRHLLSE 714
           + N+ +  +QF + LK  + L+H + G +++ +S+
Sbjct: 415 KDNNEIVTAQFLNQLKKSSVLVHTKNGRLKYQISD 449


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 410 VDSVLDVVRKESESCDCLQG 469
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 370  VASAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDED 263
            ++ AG  +++  R     +RS  +R VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 256 GTYLXAGGFIVVY 218
           GT+L +GGF +VY
Sbjct: 70  GTFLGSGGFGIVY 82


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 212 CAPTASQSPHGRHRWGRCRARQ 147
           C+P   Q+P  R   GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,305
Number of Sequences: 438
Number of extensions: 4925
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)