Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0616
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.068
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.48
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.4
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 27 4.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.9
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 7.8
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 7.8
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.7 bits (71), Expect = 0.068
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 306 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 485
+ SE+T + T E +E+ RE I LRS L D + VE + E + E+
Sbjct: 974 LASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKEL 1033
Query: 486 YKAIEDKI 509
K +ED +
Sbjct: 1034 AKQLEDAV 1041
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.48
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +3
Query: 321 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 491
T N I++ + + + HEE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 7 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 123
D L+ L R + +E E ++ +C E K L YE
Sbjct: 2536 DEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 339 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIEDKIP 512
A +E + ++E +EA +NE R L+ LEG ++ L++ Q + YK E +
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64
Query: 513 Q 515
Q
Sbjct: 65 Q 65
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 7 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 99
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 315 EQTNNFIVATKEA-LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 482
+Q VA ++A +E K E + + + SR+K + +E TRL + Q E
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIE 516
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 348 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 470
E L K+++ ++++ INEL R+K + V + T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 738 TSFGAPVHGCVVSLSAQLPM 679
TS +P GC +++S+Q+P+
Sbjct: 115 TSLSSPSQGCTLTISSQVPL 134
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 714 GCVVSLSAQLPMSRRRSAACCKLLLDGAL 628
G VVSL A LP+S+ R A +L D L
Sbjct: 51 GSVVSLGASLPLSQGRPAKSKNILNDTLL 79
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 452 QVDPGTADRGSVQGHRR*DTTAADKRDENLKKMI 553
QVD G+ D GS++ DT +K ++L+K I
Sbjct: 471 QVDNGSEDLGSIENKTVEDTGNREKSKKSLRKDI 504
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,562
Number of Sequences: 5004
Number of extensions: 47500
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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