Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0616
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0463 + 3502708-3503535                                           36   0.054
11_06_0289 - 21969248-21973516                                         33   0.29 
11_06_0185 + 21018045-21022307                                         33   0.29 
03_04_0159 + 17832666-17832938,17833634-17833873                       32   0.67 
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392...    31   0.89 
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215...    30   2.0  
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133...    30   2.7  
06_03_0047 - 15872817-15872911,15873648-15873897                       29   3.6  
11_02_0052 + 7788655-7789850,7789921-7790011                           29   6.2  
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265...    29   6.2  
01_06_0146 + 26969011-26969995,26970878-26970930                       29   6.2  
01_01_0847 - 6611378-6611554,6612181-6612366,6612547-6612658,661...    28   8.3  

>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +3

Query: 315 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 485
           E+TN+   + A  E +D K++  + K+E  + +L+ +LK+ LEG  K++  +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238

Query: 486 YKAIEDKIP 512
            K IE   P
Sbjct: 239 EKGIEHNKP 247


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 348 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 497
           +A +  ++TH+  E  +  I +L  RLKDH+E  EKT+   EQ   E   A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 348 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 497
           +A +  ++TH+  E  +  I +L  RLKDH+E  EKT+   EQ   E   A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436


>03_04_0159 + 17832666-17832938,17833634-17833873
          Length = 170

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 575 GTSSQGPRRQPGEVPAASRAPSRRSLQQ 658
           G   QGPRR+ G VPAA+ A   R+L++
Sbjct: 40  GPGDQGPRRRRGVVPAAAAAAGGRALRE 67


>12_02_1031 +
           25537495-25537552,25538774-25538836,25538966-25539279,
           25539361-25539612,25539698-25540411
          Length = 466

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = -3

Query: 742 RNQLRRAGSWLRSFSLCSASNEQTSVGGL-----LQASPGWRSRSCWNFSWLPAR-TLRT 581
           ++++ +AG WLRSF      + +   GG        A P  + +  W+F   PA+ T  T
Sbjct: 39  KSKMGKAGRWLRSFLTGGKKDRKGKDGGQPPAPPSPAPPSAKEKRRWSFRRPPAQATTNT 98

Query: 580 CSSCFA 563
            S CF+
Sbjct: 99  SSLCFS 104


>02_01_0319 -
           2148788-2148892,2149474-2149557,2149643-2149723,
           2150303-2150480,2150811-2150954,2151048-2151094,
           2151353-2151409,2151566-2151664,2151867-2151989,
           2152083-2152205,2152594-2152707,2152972-2153160,
           2153412-2153578,2153904-2153988,2155431-2155628,
           2155978-2156175
          Length = 663

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 757 ALLFCRNQLRRAGSWLRSFSLCSASNEQTSVGGLLQASPGWRSRS 623
           A +F  N  R+ GSWL ++ +C       SV GL+ A   + + S
Sbjct: 501 ASMFIENTQRKDGSWLGTWGVCFTYGAFFSVQGLIAAGRTYENSS 545


>01_06_0042 -
           25911662-25911736,25912409-25912607,25913275-25913348,
           25913431-25913580,25913666-25913821,25915378-25915464,
           25915706-25915765,25915878-25916414,25917292-25917585
          Length = 543

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 284 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 427
           +DRGG  HP+RA E   R      +R +GD     R   +R    SQG
Sbjct: 32  EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77


>06_03_0047 - 15872817-15872911,15873648-15873897
          Length = 114

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 634 RSRSCWNFSWLPARTLRTCSSC 569
           +S  CWN  W PA TLRT + C
Sbjct: 21  KSSKCWNQIWQPA-TLRTSNGC 41


>11_02_0052 + 7788655-7789850,7789921-7790011
          Length = 428

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 595 RTLRTCSSCFAQTLDHLLEVLVALVGSCGI 506
           + LR C++  A  +D ++   VAL+G CG+
Sbjct: 168 KILRRCNAILATDVDRVVRPNVALLGECGL 197


>01_06_1419 +
           37225007-37225011,37225633-37225852,37226347-37226516,
           37226615-37226676,37227002-37227207,37227581-37227634
          Length = 238

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 309 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 443
           RS   +++I+ +K      + TH+E  E+ +NE ++ +K  L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183


>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 581 SSQGPRRQPGEVPAASRAPSRRSLQQAADRRLLIGS*AERETTQP*TGAPKLVPAEQERP 760
           S Q P   P  +PA++ AP+  S   + D    I S A      P    P         P
Sbjct: 38  SPQNPTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQA------PAPPPPPTADPSPPLP 91

Query: 761 HENRGPRP 784
           H+NR P+P
Sbjct: 92  HDNRTPQP 99


>01_01_0847 -
           6611378-6611554,6612181-6612366,6612547-6612658,
           6612748-6612784,6612866-6612905
          Length = 183

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -3

Query: 604 LPARTLRTCSSCFAQTLDHLLEVLVALVGSCGILSSMALYTSAVCCSRVNLV 449
           LP       ++ F+  L H   +    VGS G+++S+++Y+S +  +  N +
Sbjct: 79  LPVLAFFALTAIFSSFLFHTHGLRKVFVGSIGLVASISMYSSPMVAASPNFI 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,737
Number of Sequences: 37544
Number of extensions: 419524
Number of successful extensions: 1800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)