Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0616
(855 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.98
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 31 1.3
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ... 30 1.7
At5g11610.1 68418.m01355 exostosin family protein contains Pfam ... 30 1.7
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 5.2
At3g10490.2 68416.m01259 no apical meristem (NAM) family protein... 29 5.2
At1g67230.1 68414.m07652 expressed protein 29 5.2
At1g47900.1 68414.m05334 expressed protein 29 5.2
At1g40133.1 68414.m04768 hypothetical protein 29 5.2
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 28 6.9
At2g07190.1 68415.m00824 hypothetical protein 28 6.9
At3g51650.1 68416.m05664 expressed protein 28 9.1
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.1 bits (67), Expect = 0.98
Identities = 30/122 (24%), Positives = 50/122 (40%)
Frame = +3
Query: 345 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKIPQLPX 524
+ A++A+ + +E++ EL +LK+ E E+ R E E K E +I +
Sbjct: 688 RRAVEAREKAEQERKMKEQQELELQLKEAFEKEEENRRMREAFALEQEK--ERRIKEARE 745
Query: 525 XXXXXXXXXXXVCAKHEEQVRKVRAGNQEKFQQLRERHPGEACSRPPTDVCSLEAEQREK 704
EQ K +EK +Q++ER E R +V +AE K
Sbjct: 746 KEENERRIKEAREKAELEQRLKATLEQEEKERQIKERQEREENERRAKEVLE-QAENERK 804
Query: 705 LR 710
L+
Sbjct: 805 LK 806
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
(Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
to mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 623 ASRAPSRRSLQQAADRRLLIGS*AERETTQP*TGAPKLVPAEQERPHENRGPRPSSGXNA 802
AS + S Q ++R + A + +P T P + E P EN+GP G +
Sbjct: 16 ASSSSPEASSSQRPNKRSKVKIDAAASSLEPATAEPAGSSSASEVPIENQGPASDPGSES 75
Query: 803 GLPXKG 820
G P G
Sbjct: 76 GEPELG 81
>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 453
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 606 QEKFQQLRERHPGEACSRPPTDVCSLEAEQREKLRNHEPARRS 734
Q K Q+R+++P + ++PP+ V S++ L+ H + S
Sbjct: 124 QPKIPQIRKKYPHRSITKPPSIVISIKQMNNMILKRHNDPKNS 166
>At5g11610.1 68418.m01355 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 546
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 606 QEKFQQLRERHPGEACSRPPTDVCSLEAEQREKLRNHEPARRS 734
Q K Q+R+++P + ++PP+ V S++ L+ H + S
Sbjct: 124 QPKIPQIRKKYPHRSITKPPSIVISIKQMNNMILKRHNDPKNS 166
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 341 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 439
HQGG+ R + RG+ RG + + PS G G
Sbjct: 86 HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118
>At3g10490.2 68416.m01259 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 451
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +3
Query: 570 HEEQVRKVRAGNQEKFQQLRE---RHPGEACSRPPTDVCSLEAEQREKLRNHEPARRSWF 740
HE ++ N + + E R E RPP VC L E L ++ R+S
Sbjct: 260 HENDLKPEEHNNNNNYDENEETLKREQMEEEERPPRPVCVLNKEAPLPLLQYKRRRQSES 319
Query: 741 RQNKSARTR 767
N S T+
Sbjct: 320 NNNSSRNTQ 328
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 333 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQ-TAEVYKAIEDK 506
+ ++ALD K+E H+EK N+ RLK + G EK + E+ E K +EDK
Sbjct: 392 VAKREQALDRKLEKHKEKE----NDFDLRLKG-ISGREKALKSEEKALETEKKKLLEDK 445
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 363 KMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKIP 512
++E E++ I S K HLEGV+K LE + + + K+P
Sbjct: 294 ELEIRNEEKNMCIRSAESANKQHLEGVKKI-AKLEAECQRLRSLVRKKLP 342
>At1g40133.1 68414.m04768 hypothetical protein
Length = 663
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 318 QTNNFIVATKEALDAKMETHEEKREAYINE 407
+ NN A +A AKME E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Frame = +3
Query: 345 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRLTLEQQTAEV 485
KE + ++ ++K E +EL R R+KD LEGV +L+++ E+
Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548
Query: 486 YKAIEDKIPQL 518
YK +E +L
Sbjct: 549 YKKVETSNKEL 559
>At2g07190.1 68415.m00824 hypothetical protein
Length = 452
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 369 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKI 509
E +EE + +N + + DH K +L ++ TA + A+ DK+
Sbjct: 267 EGNEENHVSGMNRSKKKQSDHGAETRKKKLLCQRATATTHGALNDKM 313
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 564 AKHEEQVRKVRAGNQEKFQQLRERHPGEACSRPPTDVCSLEAEQREKLRN 713
+ HE +V K R +EK Q E+ E R + + E+R +LR+
Sbjct: 246 SSHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERRRLRD 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,414
Number of Sequences: 28952
Number of extensions: 286589
Number of successful extensions: 1127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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