Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0615
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 564 VFVYEQCECSWYWLLLVCVSKVQLKASYCSIVLLFVACI 448
           ++ +++C   W+ +   CVS++  + S  + VLL   CI
Sbjct: 15  LYYHQRCSRDWFRISAGCVSRISNRISR-NRVLLRGQCI 52


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 555 KQTLGTRLVAPGSXFASATQRHPYDDGGYAVVMDSWNISSFFN 683
           K    T +   G+ F S   R    +G Y V+   W  SSF N
Sbjct: 356 KDIYETVIKLEGASFRSKPYRFGIQNGDYVVLETEW--SSFIN 396


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 555 KQTLGTRLVAPGSXFASATQRHPYDDGGYAVVMDSWNISSFFN 683
           K    T +   G+ F S   R    +G Y V+   W  SSF N
Sbjct: 62  KDIYETVIKLEGASFRSKPYRFGIQNGDYVVLETEW--SSFIN 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,545
Number of Sequences: 438
Number of extensions: 4401
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)