Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0614
         (649 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    52   2e-05
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.6  
UniRef50_Q0LNA7 Cluster: Sensor protein; n=1; Herpetosiphon aura...    33   6.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 276 FLLLRWVDELTAHLMLSGYWSP 341
           FLLLRWVDELTAHL+LSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 465 WYLPARTHNRSYH 503
           WYLPARTH RSYH
Sbjct: 572 WYLPARTHKRSYH 584


>UniRef50_Q0LNA7 Cluster: Sensor protein; n=1; Herpetosiphon
           aurantiacus ATCC 23779|Rep: Sensor protein -
           Herpetosiphon aurantiacus ATCC 23779
          Length = 755

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 448 FTAEISGTYPRGLTTGPTTISTIIFSGKVMKVFFFNFAA 564
           F  +  G YPR     P TIST IFS  ++  FF  F+A
Sbjct: 150 FNLQFVGAYPRLGDLLPPTISTFIFSVLIVGFFFHRFSA 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,494,886
Number of Sequences: 1657284
Number of extensions: 11790120
Number of successful extensions: 25399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25373
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)