Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0614
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    29   0.44 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   7.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.4  

>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 107 CLIQGNYDMW*CVMATPVRDNADQRYVFCYYININ 3
           C +QG  + W C+  TP+++N D+ Y    +++IN
Sbjct: 401 CALQG-INRW-CLTGTPLQNNVDELYSLVKFLHIN 433


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 293 GGRAHSPPDVKWLLEPIDIYN 355
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 415 SRCNYTETLQLICQGGWRICVVD 347
           S CN+   L  IC+G W  C ++
Sbjct: 479 SVCNFVAFLHQICKGVWSSCSLE 501


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 414 LPHPSNRNALPLHGRNKWYLPARTHNRSYHHKHDNFQW*SNESIF 548
           + H S ++ALP   RN W+   +       +KH    W  NE  F
Sbjct: 153 MSHKSLQHALPPEHRNIWFDMEKQKKEELKNKH---SWLYNEDPF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,399
Number of Sequences: 5004
Number of extensions: 50870
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)