Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0614
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33610| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   3.3  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           27   9.9  

>SB_33610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 435 NALPLHGRNKWYLPARTHNRSYHHKHDNFQW*SNESIFF*FRRLVNDSDGPTGW*VLTVA 614
           N + +   + W + A+   R ++ KH+ F + SN S  F   R    +D P  W V  + 
Sbjct: 192 NTIAIRDDSNWQIKAQILMREFNSKHETFIY-SNSSTAFCQDRSRTRADDP-AWEVYLMQ 249

Query: 615 HENQLRAAK 641
             + LR A+
Sbjct: 250 SSDPLRIAQ 258


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +3

Query: 420 HPSNRNALPLHGRN---KWYLPARTHNRSYHHKHDNFQW 527
           HPS   A   H       WY P++T    YHH      W
Sbjct: 87  HPSETQAYLCHPTKIQANWYHPSKTQANLYHHTKTQANW 125


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 450 HGRNKWYLPARTHNRSYHHKH 512
           H RNK Y   R H+R++HH+H
Sbjct: 340 HHRNKHY---RHHDRNHHHRH 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,137,463
Number of Sequences: 59808
Number of extensions: 371818
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)