Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0614
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.6  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.6  
U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine rece...    27   8.7  

>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 411 RLPHPSNRNALPLHGRNKWYLPARTHNRSYHHKHDNFQW 527
           +  H  +  AL    + +   P  +  +S+HHK ++FQW
Sbjct: 203 KFTHEDDLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQW 241


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 411 RLPHPSNRNALPLHGRNKWYLPARTHNRSYHHKHDNFQW 527
           +  H  +  AL    + +   P  +  +S+HHK ++FQW
Sbjct: 216 KFTHEDDLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQW 254


>U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein138 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 472 YPRGLTTGPTTISTIIFSGK-VMKVFFFNFAA*STIQTA 585
           +P G+TTG T     +   K +M  FFFNF+   +  TA
Sbjct: 283 FPLGITTGATWFFLDVPGMKTIMSYFFFNFSMLLSANTA 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,173
Number of Sequences: 27780
Number of extensions: 286804
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)