Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0614
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21400.1 68417.m03091 protein kinase family protein contains ...    29   2.0  
At1g71950.1 68414.m08317 expressed protein similar to Pi starvat...    29   2.7  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    28   6.1  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    28   6.1  
At3g06545.1 68416.m00759 hypothetical protein                          27   8.1  

>At4g21400.1 68417.m03091 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 711

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 415 YPTLRTETHYRFTAEISGTY----PRGLTTGPTTISTIIFSGKVMKV 543
           Y T +T TH RFT++I+GTY    P     G  ++ T +FS  V+ +
Sbjct: 539 YDTDQTSTH-RFTSKIAGTYGYMAPEYAIYGQFSVKTDVFSFGVLVI 584


>At1g71950.1 68414.m08317 expressed protein similar to Pi
           starvation-induced protein GB:BAA06151 from [Nicotiana
           tabacum]
          Length = 136

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 244 LYNMLILCFFFFYCLDGWTSS 306
           +Y+++I+ FFFF+CL  + +S
Sbjct: 10  VYHLIIIVFFFFFCLSSFFAS 30


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 408  QRLPHPSNRNALPLHGRNKWYLPARTHNRSYHHKHDNFQW 527
            +R P  S       H R++ +L    HN S+++ H+N QW
Sbjct: 1147 ERSPRVSQPKRSSGHSRDRQWLN-NGHNSSFNNSHNNRQW 1185


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 594 IQLGRLNR*LSGEIKKKYFHYFTTENYRAYGGRTCCE-SARVGTTYFCREAVVRFGSKGG 418
           IQ G++ R +   ++ KY    TT  Y   G R C   +   GT Y  R A + +G+  G
Sbjct: 59  IQSGKIGR-IDASLESKYPRSQTTLRYFPDGIRNCYNVNVYKGTNYLIR-ATINYGNYDG 116

Query: 417 VAV 409
           + +
Sbjct: 117 LNI 119


>At3g06545.1 68416.m00759 hypothetical protein
          Length = 191

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 382 ICQGGWRIC-VVDVYGLQ*PLNIRWAVSSSTHLSNKKKKNIILTYY 248
           +C+G W I  ++ ++GL   LN+ W    S+  S +     + T+Y
Sbjct: 12  VCRGIWYIMTLLSLFGLSKSLNLLWPPGDSSSQSFRDGAVSVTTFY 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,280,604
Number of Sequences: 28952
Number of extensions: 261826
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)