Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0613
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   106   3e-24
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.48 
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.6  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  106 bits (255), Expect = 3e-24
 Identities = 51/73 (69%), Positives = 61/73 (83%)
 Frame = +3

Query: 30  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGGRVK 209
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA+ +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 210 TLHPAVHAGILAR 248
           TLHPAVH GILAR
Sbjct: 63  TLHPAVHGGILAR 75



 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 73/210 (34%), Positives = 98/210 (46%), Gaps = 9/210 (4%)
 Frame = +2

Query: 239 LSSIIHSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXP 418
           L+  I SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA  
Sbjct: 73  LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRAAA 132

Query: 419 R-----TTTGSPSSVTRPTTML*SKK----SKRTNIIRRFGHKAEISPEGVHSYFGL*PR 571
           +     T    P+     T    S K     + T  ++ F   A      +  YF     
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQDDRNTYALKAFASTASYD-AAITDYF----- 186

Query: 572 HIGLLSASNTRXGXAQLTLRYGMNPHQKXGPGFSRPETVCRFTXTERCAWIYQLVXRA*N 751
                       G  QLTLRYG NPHQ     F     +          +I   +  A N
Sbjct: 187 ------RKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPGYIN--LMDALN 238

Query: 752 AWQLVKGA*RXALXLPCXRLSFQATLSPAG 841
           +W LVK   R  + +P    SF+  +SPAG
Sbjct: 239 SWPLVKEL-RENIGIPA-AASFK-HVSPAG 265



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 29/78 (37%), Positives = 38/78 (48%)
 Frame = +3

Query: 519 RQRLALKAFTHTSDYDLAISDYFPQAILARGXPN*P*DTV*THIRSXAQVFHDQRQFADS 698
           R   ALKAF  T+ YD AI+DYF +   A G             +S AQ F +Q      
Sbjct: 164 RNTYALKAFASTASYDAAITDYFRKQ-YAAGVDQLTLRYGANPHQSPAQAFMEQGPL-PF 221

Query: 699 RXLNGAPGFINXXDXLET 752
           + L G+PG+IN  D L +
Sbjct: 222 KVLCGSPGYINLMDALNS 239



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
 Frame = +1

Query: 418 KNHDRVTVVCDPADYDAVVKEIKENKHHQTIWAQGRD*P*RRSLILRTMTSPYRTTFRKQ 597
           KNH RVT++ DPADY     +   +K  Q           +      +  +     FRKQ
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQD---DRNTYALKAFASTASYDAAITDYFRKQ 189

Query: 598 YSXGASPTDLKIRYEPTSEAGP-RFFTTRDSLP 693
           Y+ G     L +RY       P + F  +  LP
Sbjct: 190 YAAGVD--QLTLRYGANPHQSPAQAFMEQGPLP 220


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 146 PHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIH 256
           PHS    GH +ST  +  S  N  S GT +D S++ H
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD-SNVAH 282


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 493 KHHQTIWAQGRD*P*RRSLILRTMTSPYRTTFRKQYSXGASP 618
           K H T+W Q R    R+S +L   ++ Y+   RK  S   SP
Sbjct: 124 KEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSP 165


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 399 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 304
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,791
Number of Sequences: 5004
Number of extensions: 55526
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)