Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0613
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    86   4e-17
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     30   2.1  
09_04_0652 - 19227686-19227926,19229368-19232294                       29   3.6  
10_08_0415 - 17761594-17762382                                         29   4.7  
11_02_0149 - 8801675-8804332                                           29   6.3  
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    29   6.3  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   8.3  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 43/75 (57%), Positives = 50/75 (66%)
 Frame = +3

Query: 24  KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGGR 203
           K AL+S+SDKT L  L   L   G  +I++GGTA  L  AG+ V  V  IT  PEML GR
Sbjct: 46  KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105

Query: 204 VKTLHPAVHAGILAR 248
           VKTLHP+VH GILAR
Sbjct: 106 VKTLHPSVHGGILAR 120



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +2

Query: 302 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 412
           VVV NLYPF   V+   ++  D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 QTSSDDLGTRQRLALKAFTHTSDYDLAISDY 584
           Q   DD   R+ LA KAF H + YD A+S++
Sbjct: 201 QGKQDDQQFRKMLAWKAFQHVASYDSAVSEW 231


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 161 CVGHHESTGDARRSGENFTSSGTCWDLSSIIHSDQEDMKRQKYEMI 298
           C   +E TG      ++F  +GT WDL   + +D    +R+ +E +
Sbjct: 822 CPDLYEQTGTGDGQSQDFHINGTVWDLIPGVITDMYQHQREAFEFM 867


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 125 QXASERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 235
           Q  SE+ P  S C     S  +  ++G +    GTCW
Sbjct: 444 QVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480


>10_08_0415 - 17761594-17762382
          Length = 262

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 113 WRYRQXASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSII 253
           WRY+  A   R  +S C G  + +      GE +  +G C D++ I+
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIV 164


>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 3   QNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 104
           QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 555 QNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
 Frame = +2

Query: 80  PVGMWPAVDCQWRYRQXASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTCWDLS 244
           P G WP     + Y   +S   PHS     ++ V H    G A   G    S      LS
Sbjct: 63  PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122

Query: 245 SIIHSDQEDMKRQ 283
           S   +     +RQ
Sbjct: 123 SASSNPPPTPRRQ 135


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 382 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 302
           DVL  +R GHV L Y L E      DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,311,820
Number of Sequences: 37544
Number of extensions: 412410
Number of successful extensions: 1198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)