Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0613
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 6e-26
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 76 3e-14
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.52
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_36959| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 31 1.6
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17) 29 4.8
SB_26612| Best HMM Match : NC (HMM E-Value=6.7) 29 4.8
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 115 bits (276), Expect = 6e-26
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +3
Query: 21 GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGG 200
G LALLSVS+K GL+ AK L + G +L+ASGGTA +RNAG+ V+DVS+IT APEMLGG
Sbjct: 33 GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92
Query: 201 RVKTLHPAVHAGILARLS 254
RVKTLHPAVH GILAR+S
Sbjct: 93 RVKTLHPAVHGGILARVS 110
Score = 83.8 bits (198), Expect = 2e-16
Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 13/214 (6%)
Frame = +2
Query: 239 LSSIIHSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXP 418
L+ + D+ DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 106 LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAA 165
Query: 419 R-----TTTGSP-------SSVTRPTTML*SKKSKRTNIIRRFGHKAEISPEGVHSYFGL 562
+ T P S +T T +++T ++ F H A + YF
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYD-MAISDYF-- 222
Query: 563 *PRHIGLLSASNTRXGXAQLTLRYGMNPHQKXGPGFS-RPETVCRFTXTERCAWIYQLVX 739
+ + LRYGMNPHQK + PE + A + +
Sbjct: 223 ---------RKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVL---NGAPGFINLC 270
Query: 740 RA*NAWQLVKGA*RXALXLPCXRLSFQATLSPAG 841
A N+WQLV+ +L +P SF+ +SPAG
Sbjct: 271 DAFNSWQLVREL-HQSLGIPA-AASFK-HVSPAG 301
Score = 48.8 bits (111), Expect = 6e-06
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Frame = +1
Query: 418 KNHDRVTVVCDPADYDAVVKEIKENKHHQTIWAQGRD*P*RRSLILRTM--TSPYRTT-- 585
KNH+RVTVVCDP DY+ V+ E+ EN+ T+ R++L L+ T+ Y
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDT------RKTLALKAFSHTASYDMAIS 219
Query: 586 --FRKQYSXGASPTDLKIRYEPTSEAGPRFFTTRDSLPI 696
FRK+YS S L+ P + + T LP+
Sbjct: 220 DYFRKEYSENVSHIPLRYGMNPHQKPA-QLMTMEPELPV 257
>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
Length = 79
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +2
Query: 239 LSSIIHSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 412
L+ + D+ DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 3 LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60
Score = 35.5 bits (78), Expect = 0.056
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 418 KNHDRVTVVCDPADYD 465
KNH+RVTVVCDP DY+
Sbjct: 63 KNHERVTVVCDPEDYN 78
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 468 CSQRNQREQTSSDDLGTRQRLALKAFTHTSDYDLAISDYF 587
C++RN R Q DLG R + L + DYD ++ YF
Sbjct: 3714 CARRNNRNQWIQVDLGRRHIVTLISTQGRQDYDQWVTSYF 3753
>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 377 NIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRFGHKAEIS 532
N D+ + P PSS TR T +KK R+N++++ G + ++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKVGQPSPLT 428
>SB_36959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 671 KNLGPASDVGSYRILRSVGLAPXEYCLRKVVRYGEVIVRSMSE 543
K G A D GSYR GL E+CL+ + R E I+RS+ E
Sbjct: 151 KGKGDALDRGSYR-----GLKLTEHCLKVIERVLEKIIRSLVE 188
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 427 DRVTVVCDPADYDAVVKEIKE-NKHHQ-TIWAQGRD*P*RRSLILRTMTSPYRTTFRKQY 600
D + CDPA+ +A++ I+E N+HHQ +W RSL + + S T+R +
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVLWVMN-----IRSLAYKKLASTRPLTWRDSF 1501
>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
Length = 714
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 359 VADAVENIDIGGVTLLRAXPRT--TTGSPSSVTRPTTML*SKKSKRTNIIRRFGHKAEIS 532
+A AV N+ + T LR P T TTGSPS VTR + S + + G ++
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTRQGVPVRIVTSSGSQVATSSGVVRAVT 304
Query: 533 PEG 541
P G
Sbjct: 305 PSG 307
>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
Length = 451
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 501 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 331
+ V+ + S+ R+T D V R+TP M TAS T +T +DTV+
Sbjct: 133 LTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVY 192
Query: 330 TNGYRLQTTTLII 292
T TL++
Sbjct: 193 TASVTFYRLTLVM 205
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 492 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 322
V+ + S+ RVT D V R+TP M TAS T +T +DTV+T
Sbjct: 68 VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127
Query: 321 YRLQTTTLII 292
TL++
Sbjct: 128 VTFYRLTLVM 137
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -1
Query: 501 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 331
+ V+ + S+ R+T D V R+TP M TAS T VT +DTV+
Sbjct: 269 LTLVMDTVYTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVY 328
Query: 330 TNGYRLQTTTLIIS 289
T TL+++
Sbjct: 329 TASVTFFRVTLVMN 342
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 171 CPTHLEL*GRRSEAXWRYRHWQSTAGHIPTGSLLTRVDPSCLK 43
CP + + R+ + Y W+ TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 486 FDFFDYSIVVGRVTDDGDPVVVL 418
FDF D+SI+V ++T PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,986,554
Number of Sequences: 59808
Number of extensions: 475623
Number of successful extensions: 1143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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