Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0613
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   111   8e-25
U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical pr...    35   0.065
U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  111 bits (266), Expect = 8e-25
 Identities = 54/87 (62%), Positives = 65/87 (74%)
 Frame = +3

Query: 9   MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPE 188
           M     LA++SVSDKTGL+ LA  L   GL LIASGGTA+ +R+ G+ V DV+D+T+ PE
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60

Query: 189 MLGGRVKTLHPAVHAGILARLSTLTRK 269
           MLGGRVKTLHPAVH GILAR +   RK
Sbjct: 61  MLGGRVKTLHPAVHGGILARDTESDRK 87



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 71/198 (35%), Positives = 90/198 (45%), Gaps = 3/198 (1%)
 Frame = +2

Query: 257 SDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGS 436
           SD++D+++     +SVVVCNLYPF +TV   D +V +AVENIDIGGVTLLRA  +     
Sbjct: 84  SDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRAAAKNHE-R 142

Query: 437 PSSVTRPTT---ML*SKKSKRTNIIRRFGHKAEISPEGVHSYFGL*PRHIGLLSASNTRX 607
            S +  P     ++   KS  T   RR    A  + E   SY        G +       
Sbjct: 143 VSVICDPADYDHIISELKSGGTTRERR-QLLALKAFEHTTSYD---ESISGFMRRRFAGN 198

Query: 608 GXAQLTLRYGMNPHQKXGPGFSRPETVCRFTXTERCAWIYQLVXRA*NAWQLVKGA*RXA 787
           G   L LRYG NPHQK        E              Y  +    N WQLVK     A
Sbjct: 199 GERALPLRYGTNPHQKDDAELYIVEDEMPIKVLNGSPG-YINILDGLNGWQLVKEL-SDA 256

Query: 788 LXLPCXRLSFQATLSPAG 841
             +P    SF+  +SPAG
Sbjct: 257 TKMPA-AASFK-HVSPAG 272



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 418 KNHDRVTVVCDPADYDAVVKEIK 486
           KNH+RV+V+CDPADYD ++ E+K
Sbjct: 138 KNHERVSVICDPADYDHIISELK 160



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 519 RQRLALKAFTHTSDYDLAISDYFPQAILARGXPN*P*D-TV*THIRSXAQVFHDQRQFAD 695
           RQ LALKAF HT+ YD +IS +  +     G    P       H +  A+++  + +   
Sbjct: 169 RQLLALKAFEHTTSYDESISGFMRRRFAGNGERALPLRYGTNPHQKDDAELYIVEDEM-P 227

Query: 696 SRXLNGAPGFINXXDXL 746
            + LNG+PG+IN  D L
Sbjct: 228 IKVLNGSPGYINILDGL 244


>U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical
           protein C55F2.1c protein.
          Length = 393

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +3

Query: 477 RNQREQTSSDDLGTRQRLALKAFTHTSDYDLAISDYFPQAILARGXPN*P*D-TV*THIR 653
           R+Q      D +  +     KAF HT+ YD +IS +  +     G    P       H +
Sbjct: 25  RSQSNSRLFDRIYGQMHRGNKAFEHTTSYDESISGFMRRRFAGNGERALPLRYGTNPHQK 84

Query: 654 SXAQVFHDQRQFADSRXLNGAPGFINXXDXL 746
             A+++  + +    + LNG+PG+IN  D L
Sbjct: 85  DDAELYIVEDEM-PIKVLNGSPGYINILDGL 114



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 27/78 (34%), Positives = 31/78 (39%)
 Frame = +2

Query: 608 GXAQLTLRYGMNPHQKXGPGFSRPETVCRFTXTERCAWIYQLVXRA*NAWQLVKGA*RXA 787
           G   L LRYG NPHQK        E              Y  +    N WQLVK     A
Sbjct: 69  GERALPLRYGTNPHQKDDAELYIVEDEMPIKVLNGSPG-YINILDGLNGWQLVKEL-SDA 126

Query: 788 LXLPCXRLSFQATLSPAG 841
             +P    SF+  +SPAG
Sbjct: 127 TKMPA-AASFK-HVSPAG 142


>U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical
           protein ZC53.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -3

Query: 196 PSISGALVMSDTS*TVRPAFRSXLAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 17
           PS S A   S     +RP  ++  A  P A     H+D+LF         E LRR +FPF
Sbjct: 6   PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57

Query: 16  D 14
           +
Sbjct: 58  E 58


>U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical
           protein F45E4.6 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 24/74 (32%), Positives = 33/74 (44%)
 Frame = +2

Query: 290 EMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML 469
           + I   + +LYPFV  +     T ADAV++ +      + +  RTTT      T  TT  
Sbjct: 244 DRIDFTLYDLYPFVGKLGGCIYTEADAVDDKNSIHTLFIYSTTRTTT-----TTAKTTTK 298

Query: 470 *SKKSKRTNIIRRF 511
            SK SK     R F
Sbjct: 299 ASKSSKTVPHSRTF 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,240,718
Number of Sequences: 27780
Number of extensions: 335754
Number of successful extensions: 910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)