Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0613
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    90   2e-18
At4g16730.1 68417.m02527 terpene synthase/cyclase family protein...    34   0.11 
At3g25830.1 68416.m03218 myrcene/ocimene synthase, putative simi...    32   0.56 
At3g25820.1 68416.m03215 myrcene/ocimene synthase, putative simi...    32   0.56 
At4g16740.1 68417.m02528 terpene synthase/cyclase family protein...    31   1.3  
At1g64410.1 68414.m07301 hypothetical protein                          31   1.3  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    31   1.3  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    28   6.9  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    28   9.1  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = +3

Query: 3   QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITR 179
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA  L NAG++V  V  +T 
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 180 APEMLGGRVKTLHPAVHAGILAR 248
            PEML GRVKTLHP +H GILAR
Sbjct: 124 FPEMLDGRVKTLHPNIHGGILAR 146



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +2

Query: 302 VVVCNLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRA 412
           VVV NLYPF + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 KNHDRVTVVCDPADYDAVVKEIKENKHHQ 504
           KNH  V +V D  DY AV++ +K  +  Q
Sbjct: 206 KNHKDVLIVVDSGDYQAVLEYLKGGQSDQ 234


>At4g16730.1 68417.m02527 terpene synthase/cyclase family protein
           similar to myrcene/ocimene synthase [GI:9957293];
           contains Pfam profile: PF01397 terpene synthase family
          Length = 547

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 639 IPYLKVSWAXPXRVLLAESSPIWRGHSPKY-E*TPSGLISALCPNRLMMFVLFDFFDYSI 463
           IPYLK  W    +  L ES     GH P + E   +G+IS+  P  L+   LF      I
Sbjct: 358 IPYLKQVWTDLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLH--LFSVLSDHI 415

Query: 462 VVGRVTDD 439
               +TDD
Sbjct: 416 SDQTLTDD 423


>At3g25830.1 68416.m03218 myrcene/ocimene synthase, putative similar
           to myrcene/ocimene synthase [Arabidopsis thaliana]
           GI:9957293; contains Pfam profiles PF03936: Terpene
           synthase family, metal binding domain, PF01397: Terpene
           synthase, N-terminal domain
          Length = 600

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 639 IPYLKVSWAXPXRVLLAESSPIWRGHSPKYE 547
           IPYLK SWA   R  L E+    RG+ P  E
Sbjct: 403 IPYLKKSWADLCRTYLVEAKWYKRGYKPSLE 433


>At3g25820.1 68416.m03215 myrcene/ocimene synthase, putative similar
           to GI:9957293; contains Pfam profile: PF01397 terpene
           synthase family
          Length = 600

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 639 IPYLKVSWAXPXRVLLAESSPIWRGHSPKYE 547
           IPYLK SWA   R  L E+    RG+ P  E
Sbjct: 403 IPYLKKSWADLCRTYLVEAKWYKRGYKPSLE 433


>At4g16740.1 68417.m02528 terpene synthase/cyclase family protein
           similar to myrcene/ocimene synthase [GI:9957293];
           contains Pfam profile  PF01397: Terpene synthase,
           N-terminal domain; contains Pfam profile PF03936:
           Terpene synthase family, metal binding domain; identical
           to cDNA (partial mRNA) E-beta-ocimene synthase
           GI:30349137
          Length = 565

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 639 IPYLKVSWAXPXRVLLAESSPIWRGHSPKY-E*TPSGLISALCPNRLM 499
           IPYLK SWA      L E+     G+ P + E   +G IS+  P  L+
Sbjct: 381 IPYLKESWADMCTTFLKEAKWYKSGYKPNFEEYMQNGWISSSVPTILL 428


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 KNHDRVTVVCDPADYDAVVKEIKENKHH 501
           K HDRVTV  +P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 KNHDRVTVVCDPADYDAVVKEIKENKHH 501
           K HDRVTV  +P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +1

Query: 418 KNHDRVTVVCDPADYDAVVKEIKENKHHQTIWAQGRD*P*RRSLILRTMTSPYRTTFRKQ 597
           K +   +++C     D + K+    K    +W  G      +SLI R   S ++TT + +
Sbjct: 86  KEYQSFSLICPDRSLDLICKD----KDEAEVWVVGL-----KSLITRVKVSKWKTTIKPE 136

Query: 598 YSXGASPTDLKIRYEP 645
            +    PT    R  P
Sbjct: 137 ITSAECPTPHARRVSP 152


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 639 IPYLKVSWAXPXRVLLAESSPIWRGHSPKYE 547
           IP+LK SW    +  L E+     GH P  E
Sbjct: 400 IPFLKKSWTDVSKAYLVEAKWYKSGHKPNLE 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,387,931
Number of Sequences: 28952
Number of extensions: 310248
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)