Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0612
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26523| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   7.9  

>SB_26523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 268 LQRHRTKVQKQNHPQSKPQADYXXXXXXXXXXWADMLDEGEQ 393
           + R RTK+  Q H   +  AD           WADM+D+G +
Sbjct: 5   INRSRTKMLDQGHQIIQGWADMVDQGRRIIQGWADMVDQGRR 46


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 202  QNK*SQEXQSHH*QDEKTGQLKLQRHRTKVQKQNHPQSKPQ 324
            Q +  Q+ Q  H Q ++    + Q+H  + Q+Q+H Q KPQ
Sbjct: 1107 QQQHDQQQQQRHDQQQQHHDQQQQQHHDQ-QQQHHEQQKPQ 1146


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 199 NQNK*SQEXQSHH*QDEKTGQL--KLQRHRTKVQKQNHPQSKPQADY 333
           N NK   E Q HH Q ++      + QRH+       H Q K Q  Y
Sbjct: 854 NMNKPINEKQRHHQQGKQQHHRLHQQQRHKKNDNPHQHQQQKQQHGY 900


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,465
Number of Sequences: 59808
Number of extensions: 197906
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)