Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0611
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.1  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   4.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   4.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.4  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   7.2  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   9.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 252 MSTPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTG 431
           +STP S+    P + S   SRLSS L+      S+   ET      +     PTG++  G
Sbjct: 729 VSTPLSNSSAYPSSGSSTFSRLSSTLT-----SSIIPTETFGSTSGSATGTRPTGSSSQG 783

Query: 432 PV 437
            V
Sbjct: 784 SV 785


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 144 DYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCMSTPTS 269
           D D   + SKL Y D +G+  TN  N+L  + + + +S P+S
Sbjct: 115 DEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSS 156


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 242  DELHEYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMYRRDGLAFTLSD 394
            DE+ EY Y+  M     + + CF     LILA   +K+  +   +A +L D
Sbjct: 997  DEISEYLYRRLMDEESSVKKTCFMTLAFLILA-GQIKVKGQLGIMARSLED 1046


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 328  KCELNRETIPDDVLGALHPELVGVLMQFIL 239
            K +L +E +P+DVL A  P+   V+ Q+I+
Sbjct: 1080 KADLEKE-LPEDVLNAEFPDGTDVITQYIV 1108


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 186 DNKGELITNVVNNLIRNNKMNCMSTPTSSGC 278
           DN  ++I ++ NN+++   ++C+ T  + GC
Sbjct: 165 DNSVQII-DLKNNILQKKAISCLDTTNAVGC 194


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
 Frame = +3

Query: 144 DYDSAVERSKLIYTDNKGELITN--VVNNLIRNNKMNCMSTPTSSGCK--APRTSSGIVS 311
           ++   +E+ KLI   NK     N   V   I   ++        +G +  +P  S   + 
Sbjct: 642 EFADVIEQDKLIEIKNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHID 701

Query: 312 RLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGPVQ 440
            L S++  L      C GE + L+H    A +  G  KT  VQ
Sbjct: 702 LLFSNMKHL--FFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQ 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,799
Number of Sequences: 5004
Number of extensions: 44725
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)