Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0611
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   30   1.9  

>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = +2

Query: 311 PVEFTLILAENYVKLMYRRDGL-AFTLSDNGGVAYGDSKDRTSSRVSWKFIPL--WENNK 481
           P    +++     ++M  ++GL A TL +  G A      + +       +P+  +  N 
Sbjct: 342 PGHSVIVVVGGAAEMMNAKEGLYALTLKNRKGFA------KLALETGSPLVPMIAFGQND 395

Query: 482 VYFKIENTEANRTWH*KXELTEMG-DHMGLTGSLTSMVLGPSGTWFP 619
           V  ++ NT  +R WH    L +MG  ++G+T S   ++ G  G   P
Sbjct: 396 VMSQLFNTMGSRFWHFNLWLRKMGRKYLGVTLSSIVLIHGRFGILMP 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,198,107
Number of Sequences: 59808
Number of extensions: 347939
Number of successful extensions: 969
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)