Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0610
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   106   2e-24
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.32 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.1  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    25   9.1  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   9.1  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  106 bits (255), Expect = 2e-24
 Identities = 51/73 (69%), Positives = 61/73 (83%)
 Frame = +3

Query: 30  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGGRVK 209
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA+ +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 210 TLHPAVHAGILAR 248
           TLHPAVH GILAR
Sbjct: 63  TLHPAVHGGILAR 75



 Score =  101 bits (241), Expect = 1e-22
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = +2

Query: 239 LSSIIHSDQEDMKRQKYEMISVVVCNXYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXP 418
           L+  I SD++D+  Q  E I +VVCN YPF +T++KP+VT+ +AVE IDIGGVTLLRA  
Sbjct: 73  LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRAAA 132

Query: 419 KNHDRVTVVCDPADYDAVVKEIKENK 496
           KNH RVT++ DPADY     +   +K
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDK 158



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 520 RQRLALKAFTHTFGL*LRHIRTYFRKQYSXGASPTDL 630
           R   ALKAF  T       I  YFRKQY+ G     L
Sbjct: 164 RNTYALKAFASTASYDAA-ITDYFRKQYAAGVDQLTL 199


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 146 PHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIH 256
           PHS    GH +ST  +  S  N  S GT +D S++ H
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD-SNVAH 282


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 541  AFTHTFGL*LRHIRTYFRKQYSXGASPTDL 630
            +F  TFG  LR  R+Y++K    G  PT+L
Sbjct: 1868 SFAQTFGYDLRKARSYWQKFLQDG-DPTEL 1896


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 267 SWSEWIIELRSQHVPL 220
           +W  W+ EL S ++PL
Sbjct: 781 AWQNWVTELSSSNIPL 796


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 399 VTPPMSMFSTASATVTS-GLDTVWTNGYXLQTT 304
           V PP+S F +AS  V   G   +W NGY    T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +2

Query: 350 DVTVADAVENIDIGGVTLLRAXPKNHDRVTVVCDPADYDAVVKEIKENKHHQTLW 514
           D    + ++++D+G          + D V V CD  D+   + +++  K  + LW
Sbjct: 517 DFNKGNLIDSLDVGSSITHAIYQHSSDLVAVACD--DFGIRIVDVQTRKIVRELW 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,108
Number of Sequences: 5004
Number of extensions: 40804
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)