Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0610
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   4e-26
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                     104   5e-23
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                30   1.4  
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.2  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  115 bits (276), Expect = 4e-26
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = +3

Query: 21  GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGG 200
           G LALLSVS+K GL+  AK L + G +L+ASGGTA  +RNAG+ V+DVS+IT APEMLGG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 201 RVKTLHPAVHAGILARLS 254
           RVKTLHPAVH GILAR+S
Sbjct: 93  RVKTLHPAVHGGILARVS 110



 Score =  114 bits (275), Expect = 5e-26
 Identities = 54/91 (59%), Positives = 67/91 (73%)
 Frame = +2

Query: 239 LSSIIHSDQEDMKRQKYEMISVVVCNXYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXP 418
           L+ +   D+ DM +Q +E I VVVCN YPFV TV+K  V V++AVE IDIGGVTLLRA  
Sbjct: 106 LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAA 165

Query: 419 KNHDRVTVVCDPADYDAVVKEIKENKHHQTL 511
           KNH+RVTVVCDP DY+ V+ E+ EN+   TL
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTL 196



 Score = 35.1 bits (77), Expect = 0.048
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 490 EQTSSDAL-GTRQRLALKAFTHTFGL*LRHIRTYFRKQYSXGAS 618
           E  + D L  TR+ LALKAF+HT    +  I  YFRK+YS   S
Sbjct: 189 ENETCDTLPDTRKTLALKAFSHTASYDMA-ISDYFRKEYSENVS 231


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score =  104 bits (250), Expect = 5e-23
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +2

Query: 239 LSSIIHSDQEDMKRQKYEMISVVVCNXYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXP 418
           L+ +   D+ DM +Q +E I VVVCN YPFV TV+K  V V++AVE IDIGGVTLLRA  
Sbjct: 3   LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAA 62

Query: 419 KNHDRVTVVCDPADYD 466
           KNH+RVTVVCDP DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 428  DRVTVVCDPADYDAVVKEIKE-NKHHQ-TLW 514
            D +   CDPA+ +A++  I+E N+HHQ  LW
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVLW 1477


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 171 CPTHLEL*GRRSEAXWRYRHWQSTAGHIPTGSLLTRVDPSCLK 43
           CP  + +   R+ +   Y  W+       TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 487 FDFFDYSIVVGRVTDDGDPVVVL 419
           FDF D+SI+V ++T    PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 257 SDQEDMKRQKYEMISVVVCNXYPFVQTVSKPDVTVADAVENIDIGGVT 400
           SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 6   SDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 404 LRAXPKNHDR--VTVVCDPADYDAVVKEIKENKHHQTL 511
           ++  P NH+   + V+CD   + A+ K  +EN+H   L
Sbjct: 176 MKIYPANHNPFYIGVMCDRCSHKAIRKSDRENRHDMEL 213


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 17  KWKTSSSQRFRQDGSTLVSKEP 82
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,182
Number of Sequences: 59808
Number of extensions: 347741
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)