Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0610
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   111   5e-25
U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  111 bits (266), Expect = 5e-25
 Identities = 54/87 (62%), Positives = 65/87 (74%)
 Frame = +3

Query: 9   MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPE 188
           M     LA++SVSDKTGL+ LA  L   GL LIASGGTA+ +R+ G+ V DV+D+T+ PE
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60

Query: 189 MLGGRVKTLHPAVHAGILARLSTLTRK 269
           MLGGRVKTLHPAVH GILAR +   RK
Sbjct: 61  MLGGRVKTLHPAVHGGILARDTESDRK 87



 Score =  109 bits (261), Expect = 2e-24
 Identities = 46/77 (59%), Positives = 61/77 (79%)
 Frame = +2

Query: 257 SDQEDMKRQKYEMISVVVCNXYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPKNHDRV 436
           SD++D+++     +SVVVCN YPF +TV   D +V +AVENIDIGGVTLLRA  KNH+RV
Sbjct: 84  SDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRAAAKNHERV 143

Query: 437 TVVCDPADYDAVVKEIK 487
           +V+CDPADYD ++ E+K
Sbjct: 144 SVICDPADYDHIISELK 160


>U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical
           protein ZC53.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -2

Query: 196 PSISGALVMSDTS*TVRPAFRSXLAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 17
           PS S A   S     +RP  ++  A  P A     H+D+LF         E LRR +FPF
Sbjct: 6   PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57

Query: 16  D 14
           +
Sbjct: 58  E 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,197
Number of Sequences: 27780
Number of extensions: 244331
Number of successful extensions: 712
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)