Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0610
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 60  LLSLAKSLSECGLQLIASGGTARXLRNA 143
           LLS  +S+SEC L   +S  +    RN+
Sbjct: 166 LLSKRRSVSECSLGTASSTSSTASSRNS 193


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 540 GVHSYFRTMTSP 575
           G HSY  T+TSP
Sbjct: 95  GKHSYLHTITSP 106


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 180 APEMLGGRVKTLHPAV 227
           AP MLGGR  T +  V
Sbjct: 340 APHMLGGRTDTTYRVV 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,222
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)