Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0610
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    90   1e-18
At1g64410.1 68414.m07301 hypothetical protein                          31   0.64 
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    31   0.64 
At5g61910.3 68418.m07772 expressed protein                             29   3.4  
At5g61910.2 68418.m07771 expressed protein                             29   3.4  
At5g61910.1 68418.m07770 expressed protein                             29   3.4  
At3g42320.1 68416.m04373 hypothetical protein various predicted ...    28   5.9  
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At1g03960.1 68414.m00381 calcium-binding EF hand family protein ...    28   5.9  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   7.8  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = +3

Query: 3   QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITR 179
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA  L NAG++V  V  +T 
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 180 APEMLGGRVKTLHPAVHAGILAR 248
            PEML GRVKTLHP +H GILAR
Sbjct: 124 FPEMLDGRVKTLHPNIHGGILAR 146



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
 Frame = +2

Query: 302 VVVCNXYPFVQTVSKPD-VTVADAVENIDIGGVTLLRAXPKNHDRVTVVCDPADYDAVVK 478
           VVV N YPF + V+ P  ++  D +ENIDIGG  ++RA  KNH  V +V D  DY AV++
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRAAAKNHKDVLIVVDSGDYQAVLE 225

Query: 479 EIKENKHHQ 505
            +K  +  Q
Sbjct: 226 YLKGGQSDQ 234


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 401 LLRAXPKNHDRVTVVCDPADYDAVVKEIKENKHH 502
           L +   K HDRVTV  +P D D   KE  E K +
Sbjct: 576 LFKYVHKGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 401 LLRAXPKNHDRVTVVCDPADYDAVVKEIKENKHH 502
           L +   K HDRVTV  +P D D   KE  E K +
Sbjct: 202 LFKYVHKGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 519 KAEISPEGVHSY---FRTMTSPYSDLLPQAILAR 611
           K E+SP  V S    FR+ TSP  DLLP  + +R
Sbjct: 172 KQELSPHQVMSLLSLFRSFTSPELDLLPHRLASR 205


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 519 KAEISPEGVHSY---FRTMTSPYSDLLPQAILAR 611
           K E+SP  V S    FR+ TSP  DLLP  + +R
Sbjct: 168 KQELSPHQVMSLLSLFRSFTSPELDLLPHRLASR 201


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 519 KAEISPEGVHSY---FRTMTSPYSDLLPQAILAR 611
           K E+SP  V S    FR+ TSP  DLLP  + +R
Sbjct: 168 KQELSPHQVMSLLSLFRSFTSPELDLLPHRLASR 201


>At3g42320.1 68416.m04373 hypothetical protein various predicted
           Helicases, Arabidopsis thaliana
          Length = 541

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 401 LLRAXPKNHDRVTVVCDPADYDAVVKEIKE 490
           L +   K HDRVTV  +P + D   KE  E
Sbjct: 336 LFKYVHKEHDRVTVTIEPNNQDTTKKEKDE 365


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 403 EGHAADVDVLDRVRXGHVRLRYRLDERVXVTDHHA 299
           +G+A     +  +R G     +RL E +  TDHHA
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHA 512


>At1g03960.1 68414.m00381 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 529

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 531 SPEGVHSYFRTMTSPYSDLLPQAILARGKP 620
           SP  +HS  R++  P   L+PQ     G+P
Sbjct: 100 SPPSLHSPLRSLKEPKRQLIPQFYYQHGRP 129


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 50  QDGSTLVSKEPVGMWP--AVDCQWRYRQXASERRP 148
           +DGS++ S EP+  +P  A DC + Y+   ++  P
Sbjct: 565 KDGSSICSSEPLCSFPSHAEDCPFSYKPSGNQEGP 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,212
Number of Sequences: 28952
Number of extensions: 228800
Number of successful extensions: 685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)