Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0609
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 2e-04
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.59
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.59
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 28 1.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 1.8
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.4
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 5.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 5.5
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 9.7
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.7
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 40.3 bits (90), Expect = 2e-04
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Frame = +2
Query: 287 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 460
S P S+ + + L+R +P+ ++AP LPS +A P+P ++ P
Sbjct: 993 SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 461 TRAIPRRS*GARTAALP-RCEARRCPRQGARSTGPYPVHVPA-LNPVEKPVPFVSQFEKP 634
T +P+ S GA +A P + P A S P PV P+ + PV KP KP
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 635 SWPYP 649
S P
Sbjct: 1108 SVAVP 1112
Score = 33.1 bits (72), Expect = 0.036
Identities = 28/80 (35%), Positives = 35/80 (43%)
Frame = +2
Query: 413 PLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEARRCPRQGARSTGPYPVHVPALNP 592
PL + S++P P +P+ S A LP +A P ST P PV +P P
Sbjct: 995 PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIP---VPSTAP-PVPIPTSTP 1050
Query: 593 VEKPVPFVSQFEKPSWPYPV 652
PVP S PS P PV
Sbjct: 1051 ---PVP-KSSSGAPSAPPPV 1066
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.59
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 230 PNPTRSSNSAISREGVR*GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSR 403
P P + + S + G GS PR S A+ ++ S ++ S + P Q + PALPSR
Sbjct: 60 PPPPKHA-SQLRAGGSSTGSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSR 117
Query: 404 EARPLPRQGSSAPTL 448
LP + S P++
Sbjct: 118 GTPSLPSRPGSRPSV 132
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.59
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 1/152 (0%)
Frame = +2
Query: 197 STCLIPSR*PCPNPTRSSNSAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQG 376
S +P P P + + + +G P R+ PS G +S +A+
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST--GRQPPPLSSSRAVSNPP 389
Query: 377 ARAPALPSREARPLPRQGSSAPT-LPRGETRAIPRRS*GARTAALPRCEARRCPRQGARS 553
A PA+P R A LP G+++ T P T P + +LP P GA +
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPT---PPSLPPSAPPSLPPSAPPSLP-MGAPA 445
Query: 554 TGPYPVHVPALNPVEKPVPFVSQFEKPSWPYP 649
P P P P+ +P P+ P P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPL-PPAAPAP 476
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 116 TSPRPSPSSKASLYLTPSTDP 178
TSP+PSPS S+ TP +P
Sbjct: 469 TSPQPSPSLSTSIMSTPKLNP 489
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 377 ARAPALPSREARPLPRQGSSAPTLPRGETRAIP 475
A + A+P EA+P P S+A P E+ +P
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVP 348
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 293 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 442
PR R A P + A +R+ ++ ALP + P PSR + P P QG S+P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.1 bits (57), Expect = 2.4
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 7/167 (4%)
Frame = +2
Query: 128 PSPSSKASLYLT-PSTD---PFHTQLRSTCLIPSR*PCPNPTRSSN--SAISREGVR*GS 289
P SSK +LY PS++ F + +P R P P+ + SAIS E +
Sbjct: 480 PYHSSKGNLYAPQPSSNVPTKFTGGASESSSVPPR-PIPSAMKGKAPASAISIEALEELD 538
Query: 290 RPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRA 469
P+ I ++S S QG+ + S E+ P P +S+P +G +
Sbjct: 539 PPKITTIDGESPSSISSRLPSSNL--EQGSSSSVTKSPESMPDPSAKASSPVTSKGV--S 594
Query: 470 IPRRS*GARTAALPRCEARRCPRQGARSTGPYPVHVPALN-PVEKPV 607
I +S A P + + +G++ + PA + P PV
Sbjct: 595 INEKS-AVNNYATPLSKPQPKDTKGSKLGNTFVAPSPAASLPASPPV 640
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 657 TWTG*GQLGFSNWDTKGTGFST-GLRAGTCTG*G 559
T TG G G +N GTG +T GL G TG G
Sbjct: 347 TGTGTGLFGSNNATNTGTGQTTGGLFGGAATGTG 380
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.2
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPS-R*PCPNPTRSSNSAISREGVR*GS 289
PTSP SP+S + +PS P +T S P +PT S S S S
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS-PSYSPTS 1638
Query: 290 RPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLP 451
S PS + S + TS P + +P PS P S +PT P
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSP 1688
Score = 25.8 bits (54), Expect = 5.5
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPS-R*PCPNPTRSSNSAISREGVR*GS 289
PTSP SP+S + +PS P T S P +PT S S S S
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTS 1652
Query: 290 RPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLP 451
S PS + S + TS P + +P PS P S +PT P
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSP 1702
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 500 AALPRCEARRCPRQGARSTGPYPVHVPALNPV---EKPVPFVS 619
AALP + P G +T PV +PA N +PVP S
Sbjct: 249 AALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTS 291
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 263 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 439
S + +R GS RSR+ PS + G R+ + S ++P A +P PR+
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393
Query: 440 PTLPRGETRAIPR 478
PT+P + R
Sbjct: 394 PTIPPDSIKVYSR 406
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 5.5
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Frame = +2
Query: 128 PSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTR-----SSNSAISREGVR*GSR 292
PS + Y P+ P R +P R P PTR S+ +S E +
Sbjct: 569 PSVVREEKNYSEPNASPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESSKKPEI 628
Query: 293 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAI 472
R IP+ + G ++ + + + P P +++ + +S+P+ P E++
Sbjct: 629 FHERHIPTPETGPNKPSKNN----ILKSTQVPVTPKQKSSTANKGSTSSPSPPSSESKKT 684
Query: 473 PR 478
R
Sbjct: 685 KR 686
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 5.5
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +2
Query: 371 QGARAPALPSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEARRCPRQGAR 550
QGAR PA+ + P GS P G P + G+RT A + P A
Sbjct: 814 QGARTPAVANGSRTPAWNTGSRTPAWNSGS--KTPAWNSGSRTPAWN--SGNKTPAWNAG 869
Query: 551 STGP---YPVHVPALNPVEKPVPFVSQFEKPSW 640
S P PA N K + S + P+W
Sbjct: 870 SRTPAWNSGNKTPAWNVGNKTPAWNSGAKTPAW 902
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 380 RAPALPSREARPLPRQGSSAPTLPRGET 463
RA A+PS++A P ++ P PR ++
Sbjct: 12 RAHAVPSQDATTTPDNANNVPKEPRAQS 39
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 164 PSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAISREGVR*GSRP 295
PS +PF+T++ +T + NP SS+ ++ V+ P
Sbjct: 613 PSGEPFNTRINATAIFTVGSGRKNPQSSSSLMFNQSSVKEEEEP 656
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 115 DVTKTITLVKGVPVPYAVDRP 177
DV K T+V G PYA DRP
Sbjct: 523 DVVKA-TIVNGPAAPYAEDRP 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,025
Number of Sequences: 5004
Number of extensions: 47667
Number of successful extensions: 203
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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