Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0609
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 38 0.008
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 34 0.073
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 33 0.13
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.17
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.17
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 33 0.22
At1g61255.1 68414.m06903 expressed protein 32 0.29
At1g26150.1 68414.m03192 protein kinase family protein similar t... 32 0.39
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.39
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.39
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.68
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 31 0.68
At2g05530.1 68415.m00585 glycine-rich protein 31 0.90
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 1.2
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 1.6
At5g46730.1 68418.m05757 glycine-rich protein 29 2.1
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.1
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 29 2.7
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.6
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 3.6
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 3.6
At2g05510.1 68415.m00583 glycine-rich protein 29 3.6
At2g05440.2 68415.m00575 glycine-rich protein 29 3.6
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 4.8
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 28 4.8
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 28 4.8
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 28 4.8
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 6.3
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 28 6.3
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 28 6.3
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain... 28 6.3
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 6.3
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 28 6.3
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 28 6.3
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 28 6.3
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 27 8.4
At3g24760.1 68416.m03108 F-box family protein ; similar to SKP... 27 8.4
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 8.4
At1g53050.1 68414.m06007 protein kinase family protein contains ... 27 8.4
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 37.5 bits (83), Expect = 0.008
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAISREGVR*GSR 292
P +P PSP S + + +PS P HT S PS P P+ S A S S
Sbjct: 204 PATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSH 263
Query: 293 PRSRAIPSRKEG---ALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT 445
+ + PS + S + + Q+ P PS + P P Q S+AP+
Sbjct: 264 SPAHS-PSHSPATPKSPSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQ-SAAPS 315
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 34.3 bits (75), Expect = 0.073
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +2
Query: 107 DIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAISREGVR*G 286
D P S SPS+ +S + + +T P H LR +P P +S SR G+R
Sbjct: 88 DHPPSSLTSPST-SSAHRSLNTSPAHPHLRDKPAVPREKPVTGLRSTSFHGSSRGGLRGS 146
Query: 287 SRPRSRAIPSRKEGALSRTRTS 352
S +S + SR + ++ S
Sbjct: 147 STVKSPPVASRGSSGVKKSGLS 168
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 10 HEVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHT 114
H G G G G+G NY G SG G +GGH+
Sbjct: 97 HSSGSGGSGWGMGPNNNYSSGSGGSGSGWGYGGHS 131
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +2
Query: 218 R*PCPNPTRSSNSAISREGV---R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAP 388
R P + + S +S+ SR G R SR RSR+ + SR+ +S P + ++P
Sbjct: 9 RSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKSP 68
Query: 389 ALPSREAR---PLPRQGSSAPT 445
A P+R R P P +G+S+P+
Sbjct: 69 AGPARRGRSPPPPPSKGASSPS 90
Score = 27.5 bits (58), Expect = 8.4
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +2
Query: 293 PRSRAIPSRKEGALSRTRTS*QALPRQG-ARAPALPSREAR-PLPRQGSSAPTLPRGETR 466
PR P R+ R+R+ + R G +R+ ++ R+ R P R+G S+ R
Sbjct: 311 PRRLRSPPRRSPIRRRSRSP---IRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSPR 367
Query: 467 AIPRRS*GARTAALPRCEARRCPRQGARSTGPYPVHVP 580
IPR+ +R+ P +R + S+ P P P
Sbjct: 368 RIPRKISRSRSPKRP-LRGKRSSSNSSSSSSPPPPPPP 404
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +2
Query: 218 R*PCPNPTRSSNSAISREGV---R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAP 388
R P + + S +S+ SR G R SR RSR+ + SR+ +S P + ++P
Sbjct: 9 RSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKSP 68
Query: 389 ALPSREAR---PLPRQGSSAPT 445
A P+R R P P +G+S+P+
Sbjct: 69 AGPARRGRSPPPPPSKGASSPS 90
Score = 27.5 bits (58), Expect = 8.4
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +2
Query: 293 PRSRAIPSRKEGALSRTRTS*QALPRQG-ARAPALPSREAR-PLPRQGSSAPTLPRGETR 466
PR P R+ R+R+ + R G +R+ ++ R+ R P R+G S+ R
Sbjct: 318 PRRLRSPPRRSPIRRRSRSP---IRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSPR 374
Query: 467 AIPRRS*GARTAALPRCEARRCPRQGARSTGPYPVHVP 580
IPR+ +R+ P +R + S+ P P P
Sbjct: 375 RIPRKISRSRSPKRP-LRGKRSSSNSSSSSSPPPPPPP 411
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 32.7 bits (71), Expect = 0.22
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 2/146 (1%)
Frame = +2
Query: 218 R*PCPNPTRSSNSAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQG-ARAPAL 394
R P +P RSS ++SR ++ R SR+ +LSR+ PR+ +R+P
Sbjct: 521 RSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPI---RSPRKSVSRSPVR 577
Query: 395 PSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEARRCP-RQGARSTGPYPV 571
SR++ SS + R R+ R+S L R R P R RS PV
Sbjct: 578 SSRKSVSRSPVRSSRRRISRSPVRS-SRKSVSRSPIRLSRRSISRSPIRLSRRSISRSPV 636
Query: 572 HVPALNPVEKPVPFVSQFEKPSWPYP 649
PVP + +P P P
Sbjct: 637 R-GRRRISRSPVPARRRSVRPRSPPP 661
Score = 31.1 bits (67), Expect = 0.68
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Frame = +2
Query: 119 SPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAISREGVR*GSR-- 292
S P S+ SL +P+ + RS P + +P RSS ++SR VR R
Sbjct: 536 SRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRI 595
Query: 293 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAI 472
RS SRK + S R S +++ R R + R+ S +P
Sbjct: 596 SRSPVRSSRKSVSRSPIRLSRRSISRSPIRLSRRSISRSPVRGRRRISRSPVPARRRSVR 655
Query: 473 PRRS*GARTAALPR 514
PR R +L R
Sbjct: 656 PRSPPPDRRRSLSR 669
Score = 27.5 bits (58), Expect = 8.4
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Frame = +2
Query: 242 RSSNSAISREGVR*GSRPRSRAIPSRKEGALSR--TRTS*QALPRQGARAPALPSREARP 415
RSS + SR VR R SR+ +LSR TR S ++L R R+P S P
Sbjct: 517 RSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPR-KSVSRSP 575
Query: 416 LPRQGSSAPTLP-RGETRAIPRRS*GARTAALPRCEARRCPRQGARS 553
+ S P R R I R + ++ R R R +RS
Sbjct: 576 VRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSISRS 622
>At1g61255.1 68414.m06903 expressed protein
Length = 143
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNYVDGGYSSGYGL 96
G+I G G GG+Y+ + GGYS G G+
Sbjct: 66 GFILPGSGPGGSYSELSGGYSKGRGV 91
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 31.9 bits (69), Expect = 0.39
Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Frame = +2
Query: 107 DIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLI--PSR*PCPNPTRSSNSAISREGVR 280
+IP PR PS AS PST P ++ S P R P P S S
Sbjct: 190 EIPPPPRHLPSPPASE--RPSTPPSDSEHPSPPPPGHPKRREQPPPPGSKRPTPSPPSPS 247
Query: 281 *GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPAL--PSREARP--LPRQGSSAPTL 448
RP + PS E L + S LP + P L PS P PR+ S P
Sbjct: 248 DSKRPVHPSPPSPPEETLPPPKPSPDPLPSNSSSPPTLLPPSSVVSPPSPPRKSVSGPDN 307
Query: 449 P 451
P
Sbjct: 308 P 308
Score = 30.3 bits (65), Expect = 1.2
Identities = 35/111 (31%), Positives = 42/111 (37%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAISREGVR*GSR 292
PT+P P P S SL P+ DP L L+P P +P R S + E
Sbjct: 144 PTNPPPPPESPPSL---PAPDPPSNPLPPPKLVP---PSHSPPRHLPSPPASE-----IP 192
Query: 293 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT 445
P R +PS A R T P P R +P P GS PT
Sbjct: 193 PPPRHLPS--PPASERPSTPPSDSEHPSPPPPGHPKRREQP-PPPGSKRPT 240
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/87 (28%), Positives = 32/87 (36%)
Frame = +2
Query: 395 PSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEARRCPRQGARSTGPYPVH 574
PS P P S P+LP + + P + R P A P P H
Sbjct: 141 PSPPTNP-PPPPESPPSLPAPDPPSNPLPP--PKLVPPSHSPPRHLPSPPASEIPPPPRH 197
Query: 575 VPALNPVEKPVPFVSQFEKPSWPYPVH 655
+P+ E+P S E PS P P H
Sbjct: 198 LPSPPASERPSTPPSDSEHPSPPPPGH 224
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.9 bits (69), Expect = 0.39
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +2
Query: 239 TRSSNSAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA---LPSREA 409
+RS ++SR R SR RSR+ ++ TS PR +R+P+ SR
Sbjct: 215 SRSRGRSVSRSRSR--SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSR 272
Query: 410 RPLP---RQGSSAPTLPRGETRAIPRRS 484
PLP ++GS +P+ P I RS
Sbjct: 273 SPLPSVQKEGSKSPSKPSPAKSPIHTRS 300
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.9 bits (69), Expect = 0.39
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +2
Query: 239 TRSSNSAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA---LPSREA 409
+RS ++SR R SR RSR+ ++ TS PR +R+P+ SR
Sbjct: 215 SRSRGRSVSRSRSR--SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSR 272
Query: 410 RPLP---RQGSSAPTLPRGETRAIPRRS 484
PLP ++GS +P+ P I RS
Sbjct: 273 SPLPSVQKEGSKSPSKPSPAKSPIHTRS 300
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 16 VGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 108
+GY G G GG YN GGYS G G +GG
Sbjct: 293 LGYSGRYGGGGGGYNR--GGYSMGGGGGYGG 321
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 108
G G+G G+GGA GGY G G + GG
Sbjct: 353 GIGGYGGGMGGAGG---GGYRGGGGYDMGG 379
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 1 GIRHEVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 108
G R GY G G GGA Y GG +G G +GG
Sbjct: 368 GYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGG 403
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 31.1 bits (67), Expect = 0.68
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 293 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLP-RQGSSAPTLPRGETRA 469
P + AIP +S + S LP RA ALP P+ R+G +AP LP T A
Sbjct: 200 PGNAAIPVEPPLTMSAEKESYAPLPPPPGRA-ALPPPPPLPMAVRKGVAAPPLPPPGTAA 258
Query: 470 IP 475
+P
Sbjct: 259 LP 260
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 111
GY G G G G + GGY+ G G N GGH
Sbjct: 50 GYNGGG-GYNGGGGHNGGGYNGGGGYNGGGH 79
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 46 GGAYNYVDGGYSSG-YGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHV 204
G Y V G G + L GG T T T + + + PY P P PV+ H+
Sbjct: 212 GHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHI 265
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = +2
Query: 395 PSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEARRCP---RQGARSTGPY 565
P + +P+P + PT P+ + + P + A P + CP + A + P
Sbjct: 56 PKPQPKPVPPP-ACPPTPPKPQPKPAPPPE--PKPAPPPAPKPVPCPSPPKPPAPTPKPV 112
Query: 566 PVHVPALNPVEKPVPFVSQFEKPSWPYP 649
P H P P P P S PS P P
Sbjct: 113 PPHGPPPKPAPAPTPAPSPKPAPSPPKP 140
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 108
G GHG G GGA + GGY+SG G GG
Sbjct: 83 GGSGHGGGGGGAAS--SGGYASGAGEGGGG 110
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 28 GHGQGLGGAYNYVDGGYSSGYGLNFGG 108
G G+G GG Y + GY+SG G GG
Sbjct: 64 GSGEGAGGGYGGAE-GYASGGGSGHGG 89
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 19 GYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 108
GY G G+G GG Y GG++ G G GG
Sbjct: 99 GYASGAGEGGGGGYGGAAGGHAGGGGGGSGG 129
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 230 PNPTRSSNSAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREA 409
P+ RS + + SR R SR RSR SR + ++S ++ + +R+P S+
Sbjct: 204 PSRGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260
Query: 410 RPLPRQGSSAPTL 448
P PR+ + TL
Sbjct: 261 SPSPRRWITVETL 273
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 178 VPYPVEKHVPYPVKVAVPQPYEVVKQCHIT*RSTLRFPSTFPRHTQSKRRCLIPYTY 348
VP E+ + PV+ PQ +V K+ I R+ R P T PR +++ + Y
Sbjct: 536 VPEASEEEIEAPVQEEKPQKEKVFKEKPIRNRTRGRGPETIPRAILKRKKSTNYWVY 592
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 166 VDRPVPYPVEKHVPYPVKVAVPQPYEVV--KQCHIT*RSTLRFPSTFPRHT 312
++RPVP P+ + P+ + A Q +V+ Q +IT S + P+T HT
Sbjct: 307 LNRPVPVPISGYPPF-MNQAQQQHIQVIYTGQPYITGNSPMTLPATAYHHT 356
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 308 IPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSA 439
+ RKE + R + QA PRQ +AP+ PS A+P+ SS+
Sbjct: 378 VAERKEDRIKRLQQYFQAQPRQYTQAPSAPS-PAQPVLSYVSSS 420
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 79 SSGYGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHVPYPVKVAVP 231
S G G D + ++L P P + PVP+P E P PV P
Sbjct: 128 SGGNGWTESAANDPAREVSLA---PFPLQLTHPVPFPAEPGSPDPVSPPPP 175
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 111
G G+G G GG Y G Y G G GGH
Sbjct: 73 GLDGYGGGHGGHYGGGGGHYGGGGGHGGGGH 103
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 28 GHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVTKTITLVKGV 150
G G G GG Y GGY G G + GG + + + GV
Sbjct: 114 GGGHGGGGHYGGGGGGYGGGGGHHGGGGHGLNEPVQTKPGV 154
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 28 GHGQGLGGAYNYVDGGYSSGYGLNFGG 108
G G+G GG GGY G G ++GG
Sbjct: 74 GGGRGYGGGGRREGGGYGGGDGGSYGG 100
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 28 GHGQGLGGAYNYVDGGYSSGYGLNFGG 108
G G+G GG GGY G G ++GG
Sbjct: 138 GGGRGYGGGGRREGGGYGGGDGGSYGG 164
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 19 GYIGHG-QGLGGAYNYVDGGY---SSGYGLNFGGH 111
G+ G G G GG Y DGGY + GYG GG+
Sbjct: 115 GFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGY 149
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -3
Query: 590 G*EQXHARGKGLSNGHLDGDTDVLHNGVGLRYGHLNFDG 474
G E+ A LSNGH G+ DVL N V +LN G
Sbjct: 100 GYEERVALKAVLSNGHCYGELDVLTNIVNNSLSYLNSGG 138
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNYVD--GGY--SSGYGLNFGGH 111
GY G G G GG+ Y GGY S GYG GG+
Sbjct: 129 GYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY 163
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 145 GVPVPYAVDRPVP---YPVEKHVPYPVKVAVPQPYE 243
G PY+ +P P YP P P+K P PYE
Sbjct: 46 GPKFPYSPPKPPPIEKYPPPVQYPPPIKKYPPPPYE 81
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAIS 265
P SPS S +TPS P + S + PS P +P+ S +++ S
Sbjct: 666 PAGHLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSASPS 716
>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF00169: Pleckstring homology
(PH) domain, PF01852: Lipid-binding START domain
Length = 733
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Frame = -3
Query: 380 EHLDGVRPV-------NWYVYGI--RHLLFDWVWRGNVDGNLNVLLHVIWH 255
EHLDG + +W +G+ R LL WR DG +L H ++H
Sbjct: 249 EHLDGHTDIIHLQLYSDWLPWGMNRRDLLLRRYWRREDDGTYVILCHSVYH 299
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +2
Query: 263 SREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAP 442
SR GSR RS + P R + R S PR+ +R P+PRQ S
Sbjct: 191 SRSPPHNGSRVRSGS-PGRVKSHSRSPRRS--VSPRKNRSYTPEQARSQSPVPRQSRSPT 247
Query: 443 TLPRG 457
+PRG
Sbjct: 248 PVPRG 252
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +1
Query: 19 GYIGHGQGLGGAYNY-VDGGY--SSGYGLNFGG 108
GY G G G GG Y GGY GYG +GG
Sbjct: 586 GYGGGGGGYGGGGGYGGGGGYGGGGGYGGGYGG 618
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 566 PVHVPALNPVEKPVPFVSQFEKPSWP 643
PV +PA P P V Q + PSWP
Sbjct: 248 PVPIPAPRQPPPPPPQVYQTQPPSWP 273
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 148 VPVPYAVDRPVPYPVEKHVPYPVKVAVPQPYEV 246
+P+P + P+P + H+ P+ +A+P P +
Sbjct: 355 MPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPI 387
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 142 KGVPVPYAVDRPVPYPVEKHVPYPVKVAVPQP 237
K PVP +PVP P K VP P +VP P
Sbjct: 35 KHKPVPSPKPKPVPSPKPKPVPSP---SVPSP 63
>At3g24760.1 68416.m03108 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 383
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 110 IPTSPRPSPSSKASLYL--TPSTDPFHTQ 190
+P SP PSPSS L+L +T FH Q
Sbjct: 50 LPPSPSPSPSSPPWLFLFGIHNTSSFHNQ 78
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAIS 265
P+ P SPSS L+PS+ P L PS P P P+ S S++S
Sbjct: 38 PSPPSSSPSSAPPSSLSPSSPP------PLSLSPSSPPPPPPSSSPLSSLS 82
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 113 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNSAIS 265
P+ P SPSS L+PS+ P L PS P P P+ S S++S
Sbjct: 87 PSPPSSSPSSAPPSSLSPSSPP------PLSLSPSSPPPPPPSSSPLSSLS 131
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 458 ETRAIPRRS*GAR-TAALPRCEARRCPRQGARSTGPYPVHVPALNPVEKPVPFVSQFE 628
E+RAIP A A++ + +++ R + P+P V + P++ P P FE
Sbjct: 468 ESRAIPAPDANAELVASMQKRQSQSTNRSRSEKFNPHPEEVASGFPIDPPRPSSQAFE 525
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,354,147
Number of Sequences: 28952
Number of extensions: 286029
Number of successful extensions: 1390
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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